RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA640350", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA640350 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27965350 27965350 PRJNA640350_P_NODE_28185_length_178_cov_1.765101_g28024_i0 PRJNA640350 28185 178 1.765101 3.14187978 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 53.9 5.97e-7   NR RPJ31327.1 2026800 g28024 i0 95.8 0.404494382022472 24 1 40.4 0 172 101 131 154 RPJ31327.1 MAG: hypothetical protein EHM17_15585 [Verrucomicrobiaceae bacterium] diamond 72 53.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
32199174 32199174 PRJNA640350_P_NODE_31438_length_169_cov_1.307143_g31277_i0 PRJNA640350 31438 169 1.307143 2.20907167 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 63.5 6.05e-10   NR MDB6061048.1 2026800 g31277 i0 54.5 3 55 25 97.6 0 3 167 389 443 MDB6061048.1 TonB-dependent receptor [Verrucomicrobiaceae bacterium] diamond 507 63.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;