RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA640350", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA640350 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17188355 17188355 PRJNA640350_P_NODE_24154_length_194_cov_2.824242_g23993_i0 PRJNA640350 24154 194 2.824242 5.47902948 Calycomorphotria hydatis 2528027 Bacteria Bacteria 62.1 2.78e-5   NTclustered gi|1712520392|gb|CP036316.1| 2528027 g23993 i0 100 0.608247422680412 33 0 17 0 106 138 4946696 4946728 Calycomorphotria hydatis strain V22 chromosome blastn 118 62.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Calycomorphotria Calycomorphotria hydatis
26764491 26764491 PRJNA640350_P_NODE_40701_length_151_cov_1.450820_g40540_i0 PRJNA640350 40701 151 1.45082 2.1907382 Isosphaeraceae bacterium 2691532 Bacteria Bacteria 62.8 8.62e-10   NR HKI17904.1 2691532 g40540 i0 71.8 2.58278145695364 39 11 77.5 0 119 3 222 260 HKI17904.1 ATP-binding protein [Isosphaeraceae bacterium] diamond 390 62.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium
31439810 31439810 PRJNA640350_P_NODE_29076_length_175_cov_2.184932_g28915_i0 PRJNA640350 29076 175 2.184932 3.823631 Gemmataceae bacterium 2052164 Bacteria Bacteria 63.5 6.95e-10   NR MBX7105905.1 2052164 g28915 i0 62.7 3.6 51 17 87.4 1 1 153 1381 1429 MBX7105905.1 hypothetical protein [Gemmataceae bacterium] diamond 630 63.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;