RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA640350" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA640350 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26859883 26859883 PRJNA640350_P_NODE_30621_length_171_cov_1.288732_g30460_i0 PRJNA640350 30621 171 1.288732 2.20373172 Candidatus Nanosynsacchari sp. TM7_ANC_38.39_G1_1 1986206 Bacteria Bacteria 69.7 1.09e-12   NR WP_129693549.1 1986206 g30460 i0 100 0.543859649122807 31 0 54.4 0 2 94 188 218 WP_129693549.1 phosphoribosyltransferase [Candidatus Nanosynsacchari sp. TM7_ANC_38.39_G1_1] diamond 93 69.7 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Nanosynsacchari Candidatus Nanosynsacchari sp. TM7_ANC_38.39_G1_1
32893479 32893479 PRJNA640350_P_NODE_32340_length_166_cov_3.124088_g32179_i0 PRJNA640350 32340 166 3.124088 5.18598608 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 41.6 0.034   NR HEY7652794.1 2072417 g32179 i0 64.3 0.506024096385542 28 10 50.6 0 165 82 63 90 HEY7652794.1 class I SAM-dependent methyltransferase [Candidatus Methylomirabilota bacterium] diamond 84 41.6 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;