RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA640143", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA640143 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8263266 8263266 PRJNA640143_S_NODE_2727_length_476_cov_6.742597_g2541_i0 PRJNA640143 2727 476 6.742597 32.09476172 Potexvirus pepini 3433856 Viruses Viruses 813 0   NTclustered gi|1345606506|gb|MF422613.1| 112229 g2541 i0 99.774 90.8697478991597 443 1 93 0 34 476 5966 6408 Pepino mosaic virus isolate CH_bpo162, complete genome blastn 43254 813 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
14639060 14639060 PRJNA640143_S_NODE_5012_length_367_cov_27.109091_g4802_i0 PRJNA640143 5012 367 27.109091 99.49036397 Potexvirus pepini 3433856 Viruses Viruses 586 7.729999999999998e-163   NTclustered gi|217031250|gb|FJ457097.1| 112229 g4802 i0 99.688 54.1607629427793 320 1 87 0 13 332 2021 1702 Pepino mosaic virus isolate PCH 06/104 replicase, triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein genes, complete cds blastn 19877 586 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
30397451 30397451 PRJNA640143_S_NODE_26073_length_173_cov_1.125000_g25863_i0 PRJNA640143 26073 173 1.125 1.94625 Entomophthora benyvirus E 2592779 Viruses Viruses 53.5 2.27e-6   NR QED42962.1 2592779 g25863 i0 59.5 0.728323699421965 42 17 72.8 0 33 158 1625 1666 QED42962.1 putative RdRp [Entomophthora benyvirus E] diamond 126 53.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales Benyviridae   Entomophthora benyvirus E

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;