RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA640143" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA640143 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17187785 17187785 PRJNA640143_S_NODE_2014_length_537_cov_13.906000_g1866_i0 PRJNA640143 2014 537 13.906 74.67522 Epistylis sp. 8 2979171 SAR_Eukaryotes SAR_Eukaryotes 869 0   NTclustered gi|2304601484|gb|OP458305.1| 2979171 g1866 i0 98.2 76.7281191806331 500 4 92 1 34 528 54 553 Epistylis sp. 8 large subunit ribosomal RNA gene, partial sequence blastn 41203 869 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Epistylidae Epistylis Epistylis sp. 8
23562359 23562359 PRJNA640143_S_NODE_16059_length_217_cov_286.694444_g15849_i0 PRJNA640143 16059 217 286.694444 622.12694348 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 239 1.37e-58   NTclustered gi|2651357788|gb|PP174303.1| 41631 g15849 i0 93.293 3.21658986175115 164 8 75 2 17 178 3769 3607 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 698 239 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
30049232 30049232 PRJNA640143_S_NODE_28491_length_163_cov_2.166667_g28281_i0 PRJNA640143 28491 163 2.166667 3.53166721 Paramecium pentaurelia 43138 SAR_Eukaryotes SAR_Eukaryotes 42 0.023   NR CAD8157753.1 43138 g28281 i0 59.5 0.680981595092024 37 14 66.3 1 158 51 402 438 CAD8157753.1 unnamed protein product [Paramecium pentaurelia] diamond 111 42 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium pentaurelia
30251647 30251647 PRJNA640143_S_NODE_22572_length_185_cov_3.175676_g22362_i0 PRJNA640143 22572 185 3.175676 5.8750006 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.00933   NR XP_001029693.3 312017 g22362 i0 58.1 1.00540540540541 31 13 50.3 0 108 16 115 145 XP_001029693.3 hypothetical protein TTHERM_01345750 [Tetrahymena thermophila SB210] diamond 186 43.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30965867 30965867 PRJNA640143_S_NODE_21554_length_189_cov_12.348684_g21344_i0 PRJNA640143 21554 189 12.348684 23.33901276 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 50.4 3.4e-5   NR XP_001014693.1 312017 g21344 i0 52.4 0.666666666666667 42 20 66.7 0 151 26 272 313 XP_001014693.1 membrane bound O-acyltransferase, MBOAT protein [Tetrahymena thermophila SB210] diamond 126 50.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31060751 31060751 PRJNA640143_S_NODE_12655_length_244_cov_1.884058_g12445_i0 PRJNA640143 12655 244 1.884058 4.59710152 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 57 3.32e-7   NR XP_001010339.2 312017 g12445 i0 44.6 0.688524590163934 56 31 68.9 0 170 3 4 59 XP_001010339.2 actin [Tetrahymena thermophila SB210] diamond 168 57 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31566648 31566648 PRJNA640143_S_NODE_5376_length_356_cov_4.056426_g5166_i0 PRJNA640143 5376 356 4.056426 14.44087656 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 77.8 6.59e-14   NR XP_004035636.1 5932 g5166 i0 56.3 1.07865168539326 64 28 53.9 0 327 136 361 424 XP_004035636.1 major facilitator superfamily protein, putative [Ichthyophthirius multifiliis] diamond 384 77.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
31598228 31598228 PRJNA640143_S_NODE_14536_length_228_cov_8.523560_g14326_i0 PRJNA640143 14536 228 8.52356 19.4337168 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 68.6 2.44e-11   NR XP_004030454.1 5932 g14326 i0 62 0.657894736842105 50 19 65.8 0 69 218 701 750 XP_004030454.1 hypothetical protein IMG5_160550 [Ichthyophthirius multifiliis] diamond 150 68.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
31989995 31989995 PRJNA640143_S_NODE_6218_length_334_cov_2.771044_g6008_i0 PRJNA640143 6218 334 2.771044 9.25528696 Sporadotrichida 693921 SAR_Eukaryotes SAR_Eukaryotes 48.1 0.00135   NR CDW86352.1 5949 g6008 i0 27.6 2.20958083832335 123 66 95.2 3 13 330 111 227 CDW86352.1 wd40 repeat-containing protein [Stylonychia lemnae] diamond 738 48.5 0.991752577319588 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32578933 32578933 PRJNA640143_S_NODE_8059_length_299_cov_2.423664_g7849_i0 PRJNA640143 8059 299 2.423664 7.24675536 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 75.9 1.7e-13   NR XP_001016366.2 312017 g7849 i0 54.1 1.48494983277592 74 34 74.2 0 32 253 157 230 XP_001016366.2 kinesin motor catalytic domain protein [Tetrahymena thermophila SB210] diamond 444 75.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
32673041 32673041 PRJNA640143_S_NODE_10220_length_270_cov_1.360515_g10010_i0 PRJNA640143 10220 270 1.360515 3.6733905 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 99.4 2.57e-22   NR XP_001023309.1 312017 g10010 i0 74.6 0.7 63 16 70 0 230 42 333 395 XP_001023309.1 S-adenosylmethionine synthetase protein [Tetrahymena thermophila SB210] diamond 189 99.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;