RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA640143", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA640143 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28817591 28817591 PRJNA640143_S_NODE_32588_length_151_cov_0.973684_g32378_i0 PRJNA640143 32588 151 0.973684 1.47026284 Caenorhabditis remanei 31234 Nematoda Nematoda 42.7 0.0108   NR EFO96945.1 31234 g32378 i0 69.6 1.37086092715232 23 7 45.7 0 80 148 344 366 EFO96945.1 hypothetical protein CRE_19494 [Caenorhabditis remanei] diamond 207 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
30712896 30712896 PRJNA640143_S_NODE_5614_length_350_cov_2.907348_g5404_i0 PRJNA640143 5614 350 2.907348 10.175718 Caenorhabditis angaria 860376 Nematoda Nematoda 43.5 0.0422   NR CAI5447799.1 860376 g5404 i0 44.9 0.42 49 26 42 1 153 7 25 72 CAI5447799.1 unnamed protein product [Caenorhabditis angaria] diamond 147 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;