RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA640143", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA640143 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17187611 17187611 PRJNA640143_S_NODE_13094_length_240_cov_1.753695_g12884_i0 PRJNA640143 13094 240 1.753695 4.208868 Mycoplasmopsis caviae 55603 Bacteria Bacteria 56.5 0.002   NTclustered gi|2279713051|gb|CP101806.1| 55603 g12884 i0 100 2.325 30 0 13 0 89 118 845225 845254 Mycoplasmopsis caviae strain G122 chromosome, complete genome blastn 558 56.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis caviae
31831666 31831666 PRJNA640143_S_NODE_12217_length_248_cov_2.582938_g12007_i0 PRJNA640143 12217 248 2.582938 6.40568624 Bacillati 1783272 Bacteria Bacteria 145 9.98e-40   NR NLH45023.1 1898209 g12007 i0 95.8 2.57661290322581 71 3 85.9 0 3 215 125 195 NLH45023.1 MFS transporter [Acholeplasmataceae bacterium] diamond 639 145 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;