RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA640143", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA640143 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10083870 10083870 PRJNA640143_S_NODE_13768_length_234_cov_8.705584_g13558_i0 PRJNA640143 13768 234 8.705584 20.37106656 Myxococcota 2818505 Bacteria Bacteria 355 1.43e-93   NTclustered gi|386873771|gb|JQ624277.1| 34034 g13558 i0 99.49 82.0598290598291 196 0 83 1 12 206 574 379 Uncultured delta proteobacterium clone OTU-2-AFB 16S ribosomal RNA gene, partial sequence blastn 19202 355 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
31294141 31294141 PRJNA640143_S_NODE_15535_length_221_cov_6.396739_g15325_i0 PRJNA640143 15535 221 6.396739 14.13679319 Bacteria 2 Bacteria Bacteria 48.5 1.11e-4   NR OGP56854.1 1797834 g15325 i0 56.8 17.7963800904977 37 15 50.2 1 1 111 73 108 OGP56854.1 MAG: deoxyuridine 5'-triphosphate nucleotidohydrolase [Deltaproteobacteria bacterium RBG_13_61_14] diamond 3933 48.9 0.991820040899796 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_61_14

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;