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contig_metadata

4 rows where bioproject = "PRJNA640143", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA640143 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3160653 3160653 PRJNA640143_S_NODE_14623_length_228_cov_1.209424_g14413_i0 PRJNA640143 14623 228 1.209424 2.75748672 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 139 1.52e-28   NTclustered gi|2795040529|ref|XM_067944818.1| 4785 g14413 i0 89.189 6.27631578947368 111 12 49 0 118 228 404 294 Phytophthora cinnamomi 60S ribosomal protein L23 (IUM83_19754), partial mRNA blastn 1431 139 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
6259097 6259097 PRJNA640143_S_NODE_25645_length_174_cov_2.598540_g25435_i0 PRJNA640143 25645 174 2.59854 4.5214596 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 71.3 4.04e-8   NTclustered gi|2794915556|ref|XM_067892960.1| 164328 g25435 i0 97.561 1.16666666666667 41 1 24 0 134 174 683 643 Phytophthora ramorum Polyubiquitin (KRP23_7621), partial mRNA blastn 203 71.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
8808275 8808275 PRJNA640143_S_NODE_11567_length_254_cov_11.543779_g11357_i0 PRJNA640143 11567 254 11.543779 29.32119866 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 320 5.73e-83   NTclustered gi|2248512916|ref|NC_063792.1| 100870 g11357 i0 93.578 85.1141732283465 218 8 84 5 6 219 406 191 Phytophthora litchii isolate SHS3 mitochondrion, complete genome blastn 21619 320 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora litchii
17733193 17733193 PRJNA640143_S_NODE_10054_length_271_cov_231.012821_g9844_i0 PRJNA640143 10054 271 231.012821 626.04474491 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 405 1.66e-108   NTclustered gi|292680143|dbj|AB468749.1| 572078 g9844 i0 98.268 85.8856088560886 231 4 85 0 1 231 262 32 Pythium sp. UZ416 gene for large subunit ribosomal RNA, partial sequence blastn 23275 405 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. UZ416

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;