RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA640143", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA640143 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2430554 2430554 PRJNA640143_S_NODE_13362_length_238_cov_1.338308_g13152_i0 PRJNA640143 13362 238 1.338308 3.18517304 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|2785766592|ref|XM_067218429.1| 5824 g13152 i0 96.875 0.26890756302521 32 1 13 0 98 129 418 449 Plasmodium brasilianum uncharacterized protein (MKS88_005189), partial mRNA blastn 64 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
6259028 6259028 PRJNA640143_S_NODE_16985_length_212_cov_2.674286_g16775_i0 PRJNA640143 16985 212 2.674286 5.66948632 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.019   NTclustered gi|1472918426|ref|XM_026334694.1| 88456 g16775 i0 94.118 0.292452830188679 34 2 16 0 144 177 296 329 PREDICTED: Cyclospora cayetanensis uncharacterized LOC34621583 (LOC34621583), mRNA blastn 62 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
24107449 24107449 PRJNA640143_S_NODE_9179_length_282_cov_2.624490_g8969_i0 PRJNA640143 9179 282 2.62449 7.4010618 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|916506046|ref|XM_013498065.1| 44415 g8969 i0 100 0.205673758865248 29 0 10 0 210 238 210 182 Eimeria mitis uncharacterized protein (EMH_0062740), partial mRNA blastn 58 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;