RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA640143", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA640143 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17188080 17188080 PRJNA640143_S_NODE_4114_length_401_cov_5.337912_g3912_i0 PRJNA640143 4114 401 5.337912 21.40502712 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 381 4.319999999999999e-101   NTclustered gi|2874253811|emb|OY969795.1| 464461 g3912 i0 85.714 78.2693266832918 378 35 91 17 1 365 655032 655403 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 31386 381 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
28060087 28060087 PRJNA640143_S_NODE_25745_length_174_cov_1.503650_g25535_i0 PRJNA640143 25745 174 1.50365 2.616351 Chlamydiota bacterium 2081524 Bacteria Bacteria 112 1.18e-28   NR MES2344849.1 2081524 g25535 i0 93 1.94827586206897 57 4 98.3 0 173 3 108 164 MES2344849.1 IS982 family transposase [Chlamydiota bacterium] diamond 339 112 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28217737 28217737 PRJNA640143_S_NODE_13746_length_234_cov_268.015228_g13536_i0 PRJNA640143 13746 234 268.015228 627.15563352 Chlamydiota bacterium 2081524 Bacteria Bacteria 103 1.66e-24   NR MES2198641.1 2081524 g13536 i0 82.8 0.82051282051282 64 11 82.1 0 2 193 60 123 MES2198641.1 metal ABC transporter permease [Chlamydiota bacterium] diamond 192 103 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28217741 28217741 PRJNA640143_S_NODE_17006_length_212_cov_2.348571_g16796_i0 PRJNA640143 17006 212 2.348571 4.97897052 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 96.3 2.8700000000000003e-21   NR MBX9923790.1 2047756 g16796 i0 62.9 0.990566037735849 70 26 99.1 0 211 2 18 87 MBX9923790.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 210 96.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;