RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA640143", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA640143 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5713440 5713440 PRJNA640143_S_NODE_19925_length_197_cov_1.375000_g19715_i0 PRJNA640143 19925 197 1.375 2.70875 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 337 4.21e-88   NTclustered gi|2874253789|emb|OY969773.1| 412054 g19715 i0 97.462 48.8832487309645 197 5 100 0 1 197 421721 421917 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 9630 337 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13364153 13364153 PRJNA640143_S_NODE_26031_length_173_cov_1.382353_g25821_i0 PRJNA640143 26031 173 1.382353 2.39147069 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 52.8 0.015   NTclustered gi|2107901501|gb|CP070815.1| 2026742 g25821 i0 88.636 0.254335260115607 44 3 24 2 24 65 1062073 1062116 MAG: Gemmatimonadetes bacterium isolate bin118 chromosome blastn 44 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;