RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA640143", tax_clade = "Amoebozoa" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA640143 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1886412 1886412 PRJNA640143_S_NODE_6922_length_319_cov_10.865248_g6712_i0 PRJNA640143 6922 319 10.865248 34.66014112 Stenamoeba limacina 746894 Discosea other_Eukaryota 508 1.48e-139   NTclustered gi|292399455|gb|GU810183.1| 746894 g6712 i0 98.944 20.0062695924765 284 3 89 0 36 319 690 973 Stenamoeba limacina strain 4692L small subunit ribosomal RNA gene, partial sequence blastn 6382 508 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba limacina
27397233 27397233 PRJNA640143_S_NODE_18603_length_203_cov_3.114458_g18393_i0 PRJNA640143 18603 203 3.114458 6.32234974 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 48.9 1.46e-4   NR KAH3757449.1 1580589 g18393 i0 58.5 0.605911330049261 41 16 60.6 1 57 179 269 308 KAH3757449.1 circularly permutated Ras protein 1 [Pelomyxa schiedti] diamond 123 48.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29480657 29480657 PRJNA640143_S_NODE_27810_length_166_cov_1.209302_g27600_i0 PRJNA640143 27810 166 1.209302 2.00744132 Polysphondylium violaceum 133409 Evosea other_Eukaryota 57.8 5.78e-8   NR KAF2069717.1 133409 g27600 i0 46.3 4.87951807228916 54 29 97.6 0 164 3 212 265 KAF2069717.1 hypothetical protein CYY_008966 [Polysphondylium violaceum] diamond 810 57.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;