RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA638724" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA638724 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10083837 10083837 PRJNA638724_P_NODE_2448_length_385_cov_1.903846_g2362_i0 PRJNA638724 2448 385 1.903846 7.3298071 root 1 Root_unresolved Root_unresolved 678 0   NTclustered gi|285194055|gb|GU425725.1| 203 g2362 i0 99.202 105.475324675325 376 3 98 0 1 376 728 353 Campylobacter rectus clone WWP_SS3_P12 16S ribosomal RNA gene, partial sequence blastn 40608 678 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
17187524 17187524 PRJNA638724_P_NODE_4294_length_303_cov_1.578261_g4208_i0 PRJNA638724 4294 303 1.578261 4.78213083 Campylobacter showae 204 Bacteria Bacteria 536 6.389999999999999e-148   NTclustered gi|1483583529|emb|LT631453.1| 204 g4208 i0 99.659 240.138613861386 293 1 97 0 11 303 390830 390538 Campylobacter showae strain B91_SCBr genome assembly, chromosome: I blastn 72762 536 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;