RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA638724", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA638724 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1885772 1885772 PRJNA638724_P_NODE_8322_length_213_cov_4.635714_g8236_i0 PRJNA638724 8322 213 4.635714 9.87407082 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 342 9.929999999999999e-90   NTclustered gi|238617605|gb|FJ973380.1| 45107 g8236 i0 97.044 93.6478873239437 203 6 95 0 1 203 1410 1208 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 19947 342 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
6258979 6258979 PRJNA638724_P_NODE_8005_length_229_cov_5.500000_g7919_i0 PRJNA638724 8005 229 5.5 12.595 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 399 6.329999999999999e-107   NTclustered gi|2493707699|dbj|LC764482.1| 45107 g7919 i0 99.543 95.6419213973799 219 1 96 0 11 229 129 347 Heteromita globosa LAP3-2017 gene for 18S rRNA, partial sequence blastn 21902 399 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
13363756 13363756 PRJNA638724_P_NODE_7711_length_236_cov_3.742331_g7625_i0 PRJNA638724 7711 236 3.742331 8.83190116 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 248 2.52e-61   NTclustered gi|238617605|gb|FJ973380.1| 45107 g7625 i0 86.325 43.0381355932203 234 24 96 4 1 226 1881 1648 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 10157 248 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
18461680 18461680 PRJNA638724_P_NODE_2535_length_379_cov_4.316993_g2449_i0 PRJNA638724 2535 379 4.316993 16.36140347 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 383 1.1299999999999995e-101   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g2449 i0 86.226 56.7044854881267 363 39 94 11 12 369 4021 3665 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 21491 383 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;