RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA638724" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA638724 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1885768 1885768 PRJNA638724_P_NODE_6622_length_251_cov_1.264045_g6536_i0 PRJNA638724 6622 251 1.264045 3.17275295 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 390 4.239999999999999e-104   NTclustered gi|225696191|gb|FJ805858.1| 259957 g6536 i0 95.851 133.972111553785 241 10 96 0 1 241 2676 2436 Uncultured Chroococcidiopsis sp. clone AS1_2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 33627 390 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
2430519 2430519 PRJNA638724_P_NODE_3902_length_316_cov_1.226337_g3816_i0 PRJNA638724 3902 316 1.226337 3.87522492 Bacteria 2 Bacteria Bacteria 549 8.609999999999997e-152   NTclustered gi|389547738|gb|JQ402666.1| 1211 g3816 i0 99.34 94.797468354430407 303 2 96 0 4 306 320 18 Uncultured cyanobacterium clone CNY_03083 16S ribosomal RNA gene, partial sequence blastn 29956 549 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
9538135 9538135 PRJNA638724_P_NODE_6968_length_247_cov_0.885057_g6882_i0 PRJNA638724 6968 247 0.885057 2.18609079 Anabaenopsis circularis 109266 Bacteria Bacteria 270 5.659999999999999e-68   NTclustered gi|1210095109|dbj|AP018174.1| 1085406 g6882 i0 88.688 1.80161943319838 221 25 89 0 15 235 3232540 3232320 Anabaenopsis circularis NIES-21 DNA, nearly complete genome blastn 445 270 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nodulariaceae Anabaenopsis Anabaenopsis circularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;