RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA638138", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA638138 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2430453 2430453 PRJNA638138_P_NODE_26242_length_247_cov_0.885057_g26027_i0 PRJNA638138 26242 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 457 4.05e-124   NTclustered gi|1483583505|emb|LT631429.1| 204 g26027 i0 100 110 247 0 100 0 1 247 33152 33398 Campylobacter showae genome assembly, plasmid: V blastn 27170 457 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
19736221 19736221 PRJNA638138_P_NODE_32916_length_243_cov_0.876471_g32701_i0 PRJNA638138 32916 243 0.876471 2.12982453 Campylobacter rectus 203 Bacteria Bacteria 350 6.94e-92   NTclustered gi|1622745323|gb|CP012543.1| 203 g32701 i0 92.623 2.0082304526749 244 17 100 1 1 243 1935867 1935624 Campylobacter rectus strain ATCC 33238, complete genome blastn 488 350 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
23562121 23562121 PRJNA638138_P_NODE_34859_length_241_cov_0.916667_g34644_i0 PRJNA638138 34859 241 0.916667 2.20916747 Campylobacter jejuni 197 Bacteria Bacteria 399 6.729999999999998e-107   NTclustered gi|972488604|gb|CP010480.1| 197 g34644 i0 96.68 4.95020746887967 241 7 100 1 1 241 1653778 1653539 Campylobacter jejuni strain CJ677CC524, complete genome blastn 1193 399 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
28293500 28293500 PRJNA638138_P_NODE_8006_length_360_cov_0.891986_g7791_i0 PRJNA638138 8006 360 0.891986 3.2111496 root 1 Root_unresolved Root_unresolved 48.5 0.00106   NR WP_341556083.1 195 g7791 i0 47.8 1.175 46 24 38.3 0 18 155 218 263 WP_341556083.1 reverse transcriptase domain-containing protein [Campylobacter coli] diamond 423 48.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
29165464 29165464 PRJNA638138_P_NODE_30969_length_244_cov_0.900585_g30754_i0 PRJNA638138 30969 244 0.900585 2.1974274 Campylobacterota bacterium 2026809 Bacteria Bacteria 42.7 0.0366   NR NPA81080.1 2026809 g30754 i0 50 0.491803278688525 40 20 49.2 0 71 190 276 315 NPA81080.1 hypothetical protein [Campylobacterota bacterium] diamond 120 42.7 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
31439774 31439774 PRJNA638138_P_NODE_11816_length_311_cov_1.138655_g11601_i0 PRJNA638138 11816 311 1.138655 3.54121705 Campylobacter coli 195 Bacteria Bacteria 56.2 1.17e-6   NR WP_341556083.1 195 g11601 i0 51 2.7491961414791 49 24 47.3 0 172 26 218 266 WP_341556083.1 reverse transcriptase domain-containing protein [Campylobacter coli] diamond 855 56.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
31503287 31503287 PRJNA638138_P_NODE_3596_length_508_cov_1.266667_g3382_i0 PRJNA638138 3596 508 1.266667 6.43466836 Campylobacter jejuni 197 Bacteria Bacteria 102 2.9599999999999993e-24   NR WP_341550141.1 197 g3382 i0 54.4 1.03937007874016 90 41 53.1 0 494 225 27 116 WP_341550141.1 hypothetical protein, partial [Campylobacter jejuni] diamond 528 102 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
31977544 31977544 PRJNA638138_P_NODE_13738_length_293_cov_0.977273_g13523_i0 PRJNA638138 13738 293 0.977273 2.86340989 Campylobacter coli 195 Bacteria Bacteria 62.4 5.57e-9   NR WP_341556083.1 195 g13523 i0 53.1 2.43686006825939 49 23 50.2 0 262 116 218 266 WP_341556083.1 reverse transcriptase domain-containing protein [Campylobacter coli] diamond 714 62.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;