RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA638138", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA638138 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29764974 29764974 PRJNA638138_P_NODE_34031_length_242_cov_0.911243_g33816_i0 PRJNA638138 34031 242 0.911243 2.20520806 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 70.1 6.84e-12   NR MBX3022371.1 2053517 g33816 i0 50 0.818181818181818 66 32 80.6 1 241 47 290 355 MBX3022371.1 porin family protein [Bdellovibrionales bacterium] diamond 198 70.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31092062 31092062 PRJNA638138_P_NODE_31895_length_243_cov_0.905882_g31680_i0 PRJNA638138 31895 243 0.905882 2.20129326 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 145 1.3199999999999999e-40   NR MES2527402.1 3034175 g31680 i0 87.7 1 81 10 100 0 243 1 205 285 MES2527402.1 hypothetical protein [Bdellovibrionota bacterium] diamond 243 145 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31787600 31787600 PRJNA638138_P_NODE_33157_length_242_cov_0.911243_g32942_i0 PRJNA638138 33157 242 0.911243 2.20520806 Bdellovibrionales bacterium RIFOXYD1_FULL_44_7 1797402 Bacteria Bacteria 42.4 0.0447   NR OFZ81352.1 1797402 g32942 i0 37 0.669421487603306 54 26 66.9 1 11 172 115 160 OFZ81352.1 MAG: hypothetical protein A3K03_13810 [Bdellovibrionales bacterium RIFOXYD1_FULL_44_7] diamond 162 42.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYD1_FULL_44_7
32167655 32167655 PRJNA638138_P_NODE_21038_length_250_cov_0.870056_g20823_i0 PRJNA638138 21038 250 0.870056 2.17514 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 83.6 1.64e-16   NR MES2964173.1 3034175 g20823 i0 60.7 0.732 61 24 73.2 0 66 248 10 70 MES2964173.1 ATP-binding protein [Bdellovibrionota bacterium] diamond 183 83.6 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;