RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA638138" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA638138 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24835630 24835630 PRJNA638138_P_NODE_1920_length_679_cov_1.328383_g1712_i0 PRJNA638138 1920 679 1.328383 9.01972057 Babesia bigemina 5866 SAR_Eukaryotes SAR_Eukaryotes 111 1.79e-27   NR XP_012770480.1 5866 g1712 i0 67.5 0.640648011782032 77 25 34 0 676 446 31 107 XP_012770480.1 hypothetical protein, conserved [Babesia bigemina] diamond 435 111 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina
27397225 27397225 PRJNA638138_P_NODE_34563_length_241_cov_1.660714_g34348_i0 PRJNA638138 34563 241 1.660714 4.00232074 Nothophytophthora sp. Chile5 2483409 SAR_Eukaryotes SAR_Eukaryotes 66.6 1.33e-10   NR RLN96537.1 2483409 g34348 i0 58.3 6.44813278008299 60 25 74.7 0 3 182 413 472 RLN96537.1 hypothetical protein BBJ28_00021735 [Nothophytophthora sp. Chile5] diamond 1554 66.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora sp. Chile5
27820160 27820160 PRJNA638138_P_NODE_33964_length_242_cov_0.911243_g33749_i0 PRJNA638138 33964 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 44.7 0.00756   NR RHY21236.1 157072 g33749 i0 47.2 1.79752066115702 36 16 44.6 1 130 237 103 135 RHY21236.1 hypothetical protein DYB32_009861 [Aphanomyces invadans] diamond 435 45.1 0.991130820399113 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;