RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA638138", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA638138 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27409741 27409741 PRJNA638138_P_NODE_28023_length_246_cov_0.890173_g27808_i0 PRJNA638138 28023 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 42.7 0.0374   NR WP_044882783.1 1478175 g27808 i0 39.3 1.6219512195122 61 33 69.5 2 57 227 149 209 WP_044882783.1 alanine/glycine:cation symporter family protein [Neochlamydia sp. EPS4] diamond 399 42.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. EPS4
27838938 27838938 PRJNA638138_P_NODE_26784_length_246_cov_0.976879_g26569_i0 PRJNA638138 26784 246 0.976879 2.40312234 Waddlia chondrophila 71667 Bacteria Bacteria 43.1 0.027   NR WP_013182342.1 71667 g26569 i0 65.4 0.317073170731707 26 5 26.8 1 30 95 131 156 WP_013182342.1 MFS transporter [Waddlia chondrophila] diamond 78 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;