RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA638138" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA638138 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6988063 6988063 PRJNA638138_P_NODE_6866_length_382_cov_1.009709_g6651_i0 PRJNA638138 6866 382 1.009709 3.85708838 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 628 1.3199999999999998e-175   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g6651 i0 96.354 32.5261780104712 384 11 99 1 1 381 3842 4225 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12425 628 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
19736026 19736026 PRJNA638138_P_NODE_15276_length_280_cov_1.314010_g15061_i0 PRJNA638138 15276 280 1.31401 3.679228 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 507 4.58e-139   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g15061 i0 99.286 9.80357142857143 280 2 100 0 1 280 2005 2284 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2745 507 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
19736099 19736099 PRJNA638138_P_NODE_21936_length_250_cov_0.870056_g21721_i0 PRJNA638138 21936 250 0.870056 2.17514 Neobodo designis 312471 Euglenozoa other_Eukaryota 429 8.949999999999998e-116   NTclustered gi|77994649|gb|DQ207587.1| 312471 g21721 i0 97.6 92.852 250 6 100 0 1 250 405 156 Neobodo designis strain HFCC331 18S ribosomal RNA gene, partial sequence blastn 23213 429 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
24107211 24107211 PRJNA638138_P_NODE_3119_length_543_cov_1.563830_g2905_i0 PRJNA638138 3119 543 1.56383 8.4915969 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 992 0   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g2905 i0 99.632 90.9355432780847 543 2 100 0 1 543 1422 880 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 49378 992 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;