RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA637328" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA637328 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5712719 5712719 PRJNA637328_P_NODE_22105_length_205_cov_12.307692_g21628_i0 PRJNA637328 22105 205 12.307692 25.2307686 Carchesium polypinum 168244 SAR_Eukaryotes SAR_Eukaryotes 379 7.229999999999999e-101   NTclustered gi|2304601474|gb|OP458295.1| 168244 g21628 i0 100 99.8682926829268 205 0 100 0 1 205 1077 873 Carchesium polypinum large subunit ribosomal RNA gene, partial sequence blastn 20473 379 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Carchesium Carchesium polypinum
7532950 7532950 PRJNA637328_P_NODE_19546_length_237_cov_3.936170_g19069_i0 PRJNA637328 19546 237 3.93617 9.3287229 Euplotes 5935 SAR_Eukaryotes SAR_Eukaryotes 363 8.65e-96   NTclustered gi|1233819906|gb|KX516598.1| 5938 g19069 i0 94.468 68.1603375527426 235 13 99 0 3 237 1587 1821 Euplotes raikovi isolate A305 large subunit ribosomal RNA gene, partial sequence blastn 16154 363 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes raikovi
9537734 9537734 PRJNA637328_S_NODE_1588_length_281_cov_1.786885_g1511_i0 PRJNA637328 1588 281 1.786885 5.02114685 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 468 2.17e-127   NTclustered gi|2651357791|gb|PP174306.1| 41631 g1511 i0 96.797 78.2918149466192 281 8 100 1 1 281 3669 3390 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22000 468 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
12088460 12088460 PRJNA637328_P_NODE_1910_length_664_cov_33.024390_g1512_i0 PRJNA637328 1910 664 33.02439 219.2819496 Carchesium polypinum 168244 SAR_Eukaryotes SAR_Eukaryotes 1037 0   NTclustered gi|237502259|gb|FJ810355.1| 168244 g1512 i0 98.469 87.8840361445783 588 9 89 0 3 590 424 1011 Carchesium polypinum isolate NR07 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 58355 1037 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Carchesium Carchesium polypinum
17732991 17732991 PRJNA637328_P_NODE_19914_length_234_cov_41.891892_g19437_i0 PRJNA637328 19914 234 41.891892 98.02702728 Vorticellidae 85904 SAR_Eukaryotes SAR_Eukaryotes 425 1.07e-114   NTclustered gi|2304601474|gb|OP458295.1| 168244 g19437 i0 99.571 98.991452991453 233 1 99 0 1 233 1395 1163 Carchesium polypinum large subunit ribosomal RNA gene, partial sequence blastn 23164 425 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Carchesium Carchesium polypinum
19006625 19006625 PRJNA637328_P_NODE_2535_length_571_cov_21.739464_g2091_i0 PRJNA637328 2535 571 21.739464 124.13233944 Carchesium 168243 SAR_Eukaryotes SAR_Eukaryotes 1051 0   NTclustered gi|2060743213|gb|MZ478146.1| 168244 g2091 i0 100 99.7127845884413 569 0 99 0 1 569 1050 482 Carchesium polypinum isolate WT2019011901 small subunit ribosomal RNA gene, partial sequence blastn 56936 1051 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Carchesium Carchesium polypinum
21011539 21011539 PRJNA637328_P_NODE_4817_length_400_cov_2.806268_g4342_i0 PRJNA637328 4817 400 2.806268 11.225072 Aspidisca lynceus 2035364 SAR_Eukaryotes SAR_Eukaryotes 715 0   NTclustered gi|2328859120|gb|OP828525.1| 2035364 g4342 i0 98.995 55.1325 398 4 99 0 1 398 420 23 Aspidisca lynceus isolate LCY2015101602 large subunit ribosomal RNA gene, partial sequence blastn 22053 715 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Aspidiscidae Aspidisca Aspidisca lynceus
22832541 22832541 PRJNA637328_P_NODE_8178_length_320_cov_28.118081_g7703_i0 PRJNA637328 8178 320 28.118081 89.9778592 Carchesium 168243 SAR_Eukaryotes SAR_Eukaryotes 588 1.85e-163   NTclustered gi|15149444|gb|AF401522.1| 168244 g7703 i0 100 98.85625 318 0 99 0 1 318 1712 1395 Carchesium polypinum small subunit ribosomal RNA gene, complete sequence blastn 31634 588 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Carchesium Carchesium polypinum
31756134 31756134 PRJNA637328_P_NODE_11557_length_280_cov_2.467532_g11081_i0 PRJNA637328 11557 280 2.467532 6.9090896 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 104 2.74e-25   NR XP_001024697.1 312017 g11081 i0 54.3 0.985714285714286 92 41 98.6 1 279 4 89 179 XP_001024697.1 UbiE/COQ5 family methyltransferase [Tetrahymena thermophila SB210] diamond 276 104 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;