RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA637328" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA637328 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11358558 11358558 PRJNA637328_S_NODE_2789_length_191_cov_4.844156_g2712_i0 PRJNA637328 2789 191 4.844156 9.25233796 Choricystis 41299 Plants Plants 69.4 1.63e-7   NTclustered gi|1467029762|gb|MH818560.1| 41300 g2712 i0 89.091 1.43979057591623 55 6 29 0 1 55 339 393 Choricystis parasitica isolate BUCH09 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 275 69.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Choricystis Choricystis parasitica
12088614 12088614 PRJNA637328_S_NODE_4090_length_154_cov_0.991453_g4013_i0 PRJNA637328 4090 154 0.991453 1.52683762 Trebouxia lynnae 1825957 Plants Plants 263 5.36e-66   NTclustered gi|1016111943|gb|KU716051.1| 1825957 g4013 i0 97.419 2.01298701298701 155 3 100 1 1 154 6992 6838 Trebouxia lynnae 26S-18S intergenic spacer region, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence; and 26S-18S rRNA intergenic spacer region, partial sequence blastn 310 263 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
18461283 18461283 PRJNA637328_S_NODE_1515_length_291_cov_1.519685_g1438_i0 PRJNA637328 1515 291 1.519685 4.42228335 Stichococcus bacillaris 37433 Plants Plants 291 5.25e-74   NTclustered gi|371782093|emb|HE610125.1| 37433 g1438 i0 98.193 12.0343642611684 166 3 57 0 3 168 7017 7182 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 3502 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
19735664 19735664 PRJNA637328_P_NODE_12536_length_272_cov_6.439462_g12060_i0 PRJNA637328 12536 272 6.439462 17.51533664 Desmochloris mollenhaueri 578869 Plants Plants 503 5.729999999999998e-138   NTclustered gi|313476264|emb|FM882217.1| 578869 g12060 i0 100 99.9411764705882 272 0 100 0 1 272 680 951 Desmochloris sp. TP-2008 partial 18S rRNA gene, ITS1, 5.8S rRNA and ITS2, strain CCAP 6006/2 blastn 27184 503 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris mollenhaueri
22832551 22832551 PRJNA637328_S_NODE_3418_length_169_cov_2.136364_g3341_i0 PRJNA637328 3418 169 2.136364 3.61045516 Chlamydomonas 3052 Plants Plants 268 1.29e-67   NTclustered gi|288662|emb|Z15151.1| 3059 g3341 i0 95.783 121.059171597633 166 7 98 0 4 169 2297 2132 Chloroplast Chlamydomonas gelatinosa rrnL gene blastn 20459 268 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas gelatinosa
24835507 24835507 PRJNA637328_S_NODE_2880_length_188_cov_1.192053_g2803_i0 PRJNA637328 2880 188 1.192053 2.24105964 Desmodesmus sp. DJ-2023b 3074319 Plants Plants 331 1.85e-86   NTclustered gi|2575202439|gb|OR533329.1| 3074319 g2803 i0 98.404 100.010638297872 188 3 100 0 1 188 4216 4403 Desmodesmus sp. DJ-2023b culture FBCC:A0719 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 18802 331 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Desmodesmus Desmodesmus sp. DJ-2023b
27238977 27238977 PRJNA637328_P_NODE_5723_length_367_cov_5.198113_g5248_i0 PRJNA637328 5723 367 5.198113 19.07707471 Monoraphidium minutum 39955 Plants Plants 44.7 0.0195   NR KAI8473342.1 39955 g5248 i0 37.5 0.653950953678474 80 46 64.6 3 65 301 13 89 KAI8473342.1 MAG: hypothetical protein J3K34DRAFT_411070 [Monoraphidium minutum] diamond 240 44.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
27776146 27776146 PRJNA637328_P_NODE_6264_length_352_cov_7.059406_g5789_i0 PRJNA637328 6264 352 7.059406 24.84910912 Monoraphidium minutum 39955 Plants Plants 44.7 0.0171   NR KAI8473342.1 39955 g5789 i0 37.5 0.681818181818182 80 46 67.3 3 65 301 13 89 KAI8473342.1 MAG: hypothetical protein J3K34DRAFT_411070 [Monoraphidium minutum] diamond 240 44.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;