RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA637328" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 5 ✖

bioproject 1

  • PRJNA637328 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6987561 6987561 PRJNA637328_P_NODE_17946_length_246_cov_1.035533_g17469_i0 PRJNA637328 17946 246 1.035533 2.54741118 Methanobacterium formicicum 2162 Archaea Archaea 455 1.4500000000000002e-123   NTclustered gi|952971377|emb|LN734822.1| 2162 g17469 i0 100 10.780487804878 246 0 100 0 1 246 2307110 2307355 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 2652 455 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
14637945 14637945 PRJNA637328_P_NODE_17712_length_247_cov_1.025253_g17235_i0 PRJNA637328 17712 247 1.025253 2.53237491 Methanobacterium formicicum 2162 Archaea Archaea 451 1.88e-122   NTclustered gi|683509033|emb|LN515531.1| 2162 g17235 i0 99.595 7.08097165991903 247 1 100 0 1 247 1545802 1546048 Methanobacterium formicicum genome assembly, chromosome: chrI blastn 1749 451 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
17186922 17186922 PRJNA637328_P_NODE_14774_length_260_cov_0.966825_g14297_i0 PRJNA637328 14774 260 0.966825 2.513745 Methanobacterium formicicum 2162 Archaea Archaea 481 2.55e-131   NTclustered gi|952971377|emb|LN734822.1| 2162 g14297 i0 100 5 260 0 100 0 1 260 2448983 2449242 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1300 481 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
21011461 21011461 PRJNA637328_P_NODE_18437_length_244_cov_1.046154_g17960_i0 PRJNA637328 18437 244 1.046154 2.55261576 Methanobacterium formicicum 2162 Archaea Archaea 451 1.86e-122   NTclustered gi|952971377|emb|LN734822.1| 2162 g17960 i0 100 4.60245901639344 244 0 100 0 1 244 2181521 2181764 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1123 451 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
21011470 21011470 PRJNA637328_P_NODE_18977_length_242_cov_1.020725_g18500_i0 PRJNA637328 18977 242 1.020725 2.4701545 Methanobacterium formicicum 2162 Archaea Archaea 448 2.3799999999999995e-121   NTclustered gi|952971377|emb|LN734822.1| 2162 g18500 i0 100 4.98760330578512 242 0 100 0 1 242 619157 619398 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1207 448 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;