RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA637328" and tax_clade = "Bacteria candidate phyla"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA637328 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10083624 10083624 PRJNA637328_P_NODE_19308_length_239_cov_2.678947_g18831_i0 PRJNA637328 19308 239 2.678947 6.40268333 Candidatus Southlakia 3350975 Bacteria Bacteria 387 5.18e-103   NTclustered gi|1663049602|gb|CP040008.1| 2572087 g18831 i0 95.833 92.9665271966527 240 9 100 1 1 239 140266 140505 Candidatus Saccharibacteria bacterium oral taxon 955 strain PM004 chromosome, complete genome blastn 22219 388 0.997422680412371 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 955
19735789 19735789 PRJNA637328_P_NODE_18856_length_242_cov_1.849741_g18379_i0 PRJNA637328 18856 242 1.849741 4.47637322 Candidatus Eiseniibacteriota bacterium 2212470 Bacteria Bacteria 200 7.359999999999999e-47   NTclustered gi|2874254017|emb|OY970342.1| 2212470 g18379 i0 81.818 1 242 40 99 4 1 240 262784 263023 MAG: Candidatus Eisenbacteria bacterium isolate MFD02242.bin.c.1 genome assembly, chromosome: 1 blastn 242 200 1 Bacteria Bacteria candidate phyla   Candidatus Eiseniibacteriota         Candidatus Eiseniibacteriota bacterium
27080964 27080964 PRJNA637328_P_NODE_16982_length_250_cov_1.014925_g16505_i0 PRJNA637328 16982 250 1.014925 2.5373125 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 117 3.33e-31   NR MBB1579443.1 2026720 g16505 i0 100 0.648 54 0 64.8 0 162 1 1 54 MBB1579443.1 ComF family protein [Candidatus Saccharibacteria bacterium] diamond 162 117 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;