RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA637219", tax_phylum = "Mycoplasmatota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA637219 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4983284 4983284 PRJNA637219_S_NODE_10304_length_168_cov_1.689076_g10259_i0 PRJNA637219 10304 168 1.689076 2.83764768 Bacteria 2 Bacteria Bacteria 309 7.58e-80   NTclustered gi|1720621726|gb|CP035041.1| 2100 g10259 i0 100 78.1785714285714 167 0 99 0 1 167 429091 428925 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 13134 309 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
6258700 6258700 PRJNA637219_S_NODE_15445_length_162_cov_1.353982_g15400_i0 PRJNA637219 15445 162 1.353982 2.19345084 Mesomycoplasma 2923352 Bacteria Bacteria 300 4.36e-77   NTclustered gi|1720621726|gb|CP035041.1| 2100 g15400 i0 100 15 162 0 100 0 1 162 788930 788769 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 2430 300 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
11358479 11358479 PRJNA637219_S_NODE_8049_length_185_cov_0.926471_g8004_i0 PRJNA637219 8049 185 0.926471 1.71397135 Mesomycoplasma 2923352 Bacteria Bacteria 326 8.430000000000001e-85   NTclustered gi|1720621726|gb|CP035041.1| 2100 g8004 i0 98.378 15 185 3 100 0 1 185 643282 643466 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 2775 326 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;