RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA637219", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA637219 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30554746 30554746 PRJNA637219_S_NODE_6253_length_203_cov_0.993506_g6208_i0 PRJNA637219 6253 203 0.993506 2.01681718 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 57.4 1.45e-7   NR CAD5210568.1 465554 g6208 i0 45.2 0.916256157635468 62 34 91.6 0 12 197 10 71 CAD5210568.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 186 57.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
31724429 31724429 PRJNA637219_S_NODE_9877_length_171_cov_1.196721_g9832_i0 PRJNA637219 9877 171 1.196721 2.04639291 Trichinella sp. T6 92179 Nematoda Nematoda 38.9 0.0442   NR KRX30208.1 92179 g9832 i0 67.9 0.491228070175439 28 9 49.1 0 81 164 4 31 KRX30208.1 hypothetical protein T06_7420, partial [Trichinella sp. T6] diamond 84 38.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella sp. T6
31800052 31800052 PRJNA637219_S_NODE_6337_length_202_cov_1.000000_g6292_i0 PRJNA637219 6337 202 1 2.02 Opisthokonta 33154 Nematoda Nematoda 85.9 9.6e-18   NR KAI6189471.1 293665 g6292 i0 57.6 3.6831683168316798 66 28 98 0 3 200 110 175 KAI6189471.1 Notchless-like protein 1 [Aphelenchoides bicaudatus] diamond 744 86.7 0.990772779700115 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;