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contig_metadata

14 rows where bioproject = "PRJNA637219" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 14 ✖

bioproject 1

  • PRJNA637219 · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1885006 1885006 PRJNA637219_S_NODE_18142_length_151_cov_2.843137_g18097_i0 PRJNA637219 18142 151 2.843137 4.29313687 Chloroidium ellipsoideum 63676 Plants Plants 268 1.12e-67   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g18097 i0 98.675 100 151 2 100 0 1 151 2109 1959 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 15100 268 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
6987365 6987365 PRJNA637219_S_NODE_46_length_1315_cov_16.098736_g34_i0 PRJNA637219 46 1315 16.098736 211.6983784 Trentepohlia sp. BN17 3063876 Plants Plants 76.8 7.98e-9   NTclustered gi|2192923729|ref|NC_060532.1| 3063876 g34 i0 92.453 0.27148288973384 53 4 4 0 637 689 223485 223433 Trentepohlia sp. BN17 chloroplast, complete genome blastn 357 76.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Trentepohlia Trentepohlia sp. BN17
7532891 7532891 PRJNA637219_S_NODE_11386_length_166_cov_1.735043_g11341_i0 PRJNA637219 11386 166 1.735043 2.88017138 Pseudochlorella 63681 Plants Plants 307 2.69e-79   NTclustered gi|694226641|gb|KM116465.1| 173497 g11341 i0 100 94.078313253012 166 0 100 0 1 166 2931 3096 Pabia signiensis strain SAG 2110 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 15617 307 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
8262047 8262047 PRJNA637219_S_NODE_3567_length_251_cov_3.064356_g3522_i0 PRJNA637219 3567 251 3.064356 7.69153356 Chlamydomonas reinhardtii 3055 Plants Plants 63.9 1.05e-5   NTclustered gi|2082238366|ref|XM_043059241.1| 3055 g3522 i0 91.304 0.183266932270916 46 4 18 0 117 162 1511 1556 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g081250v5), mRNA blastn 46 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17186672 17186672 PRJNA637219_S_NODE_12414_length_165_cov_1.163793_g12369_i0 PRJNA637219 12414 165 1.163793 1.92025845 Pseudochlorella signiensis 173497 Plants Plants 294 2.08e-75   NTclustered gi|725650714|ref|NC_025529.1| 173497 g12369 i0 98.788 131.187878787879 165 2 100 0 1 165 151173 151009 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 21646 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
17186792 17186792 PRJNA637219_S_NODE_4994_length_220_cov_1.333333_g4949_i0 PRJNA637219 4994 220 1.333333 2.9333326 Pseudochlorella signiensis 173497 Plants Plants 368 1.6999999999999997e-97   NTclustered gi|725650714|ref|NC_025529.1| 173497 g4949 i0 96.818 113.281818181818 220 7 100 0 1 220 151480 151261 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 24922 368 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
17732938 17732938 PRJNA637219_S_NODE_1994_length_319_cov_2.151852_g1949_i0 PRJNA637219 1994 319 2.151852 6.86440788 Pseudochlorella 63681 Plants Plants 507 5.31e-139   NTclustered gi|1139689052|emb|LT560356.1| 3072 g1949 i0 95.327 100.529780564263 321 12 100 3 1 319 607 926 Pseudochlorella pringsheimii partial 18S rRNA gene, strain SAG 211-1a blastn 32069 512 0.990234375 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella pringsheimii
18460977 18460977 PRJNA637219_S_NODE_8915_length_178_cov_1.131783_g8870_i0 PRJNA637219 8915 178 1.131783 2.01457374 Chlorella variabilis 554065 Plants Plants 167 5.149999999999999e-37   NTclustered gi|552812580|ref|XM_005843676.1| 554065 g8870 i0 84.211 0.960674157303371 171 27 96 0 5 175 205 375 Chlorella variabilis hypothetical protein (CHLNCDRAFT_140078) mRNA, complete cds blastn 171 167 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
23561409 23561409 PRJNA637219_S_NODE_16859_length_161_cov_0.910714_g16814_i0 PRJNA637219 16859 161 0.910714 1.46624954 Auxenochlorella protothecoides 3075 Plants Plants 279 5.64e-71   NTclustered gi|760448684|ref|XM_011403109.1| 3075 g16814 i0 98.125 0.993788819875776 160 3 99 0 2 161 300 141 Auxenochlorella protothecoides hypothetical protein partial mRNA blastn 160 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
26637767 26637767 PRJNA637219_S_NODE_11001_length_167_cov_0.864407_g10956_i0 PRJNA637219 11001 167 0.864407 1.44355969 Monoraphidium neglectum 145388 Plants Plants 43.5 0.00134   NR XP_013891194.1 145388 g10956 i0 42.9 1.50898203592814 42 24 75.4 0 167 42 21 62 XP_013891194.1 hypothetical protein MNEG_15788 [Monoraphidium neglectum] diamond 252 43.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
28533920 28533920 PRJNA637219_S_NODE_10507_length_167_cov_1.296610_g10462_i0 PRJNA637219 10507 167 1.29661 2.1653387 Ulva partita 1605170 Plants Plants 97.4 1.28e-24   NR BAV58192.1 1605170 g10462 i0 80 0.988023952095808 55 11 98.8 0 2 166 51 105 BAV58192.1 H/ACA ribonucleoprotein complex subunit 3 [Ulva partita] diamond 165 97.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva partita
30270832 30270832 PRJNA637219_S_NODE_712_length_490_cov_7.390023_g667_i0 PRJNA637219 712 490 7.390023 36.2111127 Picochlorum sp. BPE23 2696299 Plants Plants 142 2.1e-40   NR KAI8104783.1 2696299 g667 i0 65.6 3.03673469387755 122 42 74.7 0 27 392 1 122 KAI8104783.1 hypothetical protein M9434_003335 [Picochlorum sp. BPE23] diamond 1488 142 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
30270833 30270833 PRJNA637219_S_NODE_7452_length_190_cov_1.085106_g7407_i0 PRJNA637219 7452 190 1.085106 2.0617014 Gonium pectorale 33097 Plants Plants 52.4 6.96e-6   NR KXZ42091.1 33097 g7407 i0 77.8 2.13157894736842 27 6 42.6 0 190 110 285 311 KXZ42091.1 hypothetical protein GPECTOR_208g403 [Gonium pectorale] diamond 405 52.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
31692840 31692840 PRJNA637219_S_NODE_16477_length_161_cov_1.366071_g16432_i0 PRJNA637219 16477 161 1.366071 2.19937431 Tetraselmis sp. RG-15 65602 Plants Plants 46.2 6.67e-4   NR AAB70556.1 65602 g16432 i0 87 0.428571428571429 23 3 42.9 0 161 93 229 251 AAB70556.1 chlorophyll a/b binding protein [Tetraselmis sp. RG-15] diamond 69 46.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis sp. RG-15

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;