RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA637219", tax_clade = "Opisthokonta" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 12 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 12 ✖

bioproject 1

  • PRJNA637219 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3159809 3159809 PRJNA637219_S_NODE_83_length_1075_cov_22.948343_g65_i0 PRJNA637219 83 1075 22.948343 246.69468725 Brachionus rubens 392764 Rotifera other_Eukaryota 409 5.63e-109   NTclustered gi|632795126|gb|KJ489417.1| 392764 g65 i0 74.851 20.9153488372093 1006 201 91 47 100 1075 10160 11143 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 22484 409 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
4436565 4436565 PRJNA637219_S_NODE_6144_length_204_cov_1.612903_g6099_i0 PRJNA637219 6144 204 1.612903 3.29032212 Brachionus angularis 396692 Rotifera other_Eukaryota 156 1.32e-33   NTclustered gi|1999716433|gb|MT875425.1| 396692 g6099 i0 80.788 3.4656862745098 203 35 99 4 1 201 417 217 Brachionus angularis chromosome I mitochondrion, complete sequence blastn 707 156 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus angularis
9537220 9537220 PRJNA637219_S_NODE_11088_length_167_cov_0.864407_g11043_i0 PRJNA637219 11088 167 0.864407 1.44355969 Brachionus koreanus 1199090 Rotifera other_Eukaryota 150 4.83e-32   NTclustered gi|477541870|gb|KC603851.1| 1199090 g11043 i0 83.432 9.64670658682635 169 20 99 7 1 166 10134 9971 Brachionus sp. 'koreanus' chromosome I mitochondrion, complete sequence blastn 1611 150 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus koreanus
17186780 17186780 PRJNA637219_S_NODE_34_length_1471_cov_2.804501_g24_i0 PRJNA637219 34 1471 2.804501 41.25420971 Cephalodella gracilis 2961693 Rotifera other_Eukaryota 1221 0   NTclustered gi|2273760299|gb|ON898536.1| 2961693 g24 i0 95.773 46.5098572399728 757 32 51 0 3 759 3 759 Cephalodella gracilis voucher NIBRGR0000649742 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial blastn 68416 1221 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Notommatidae Cephalodella Cephalodella gracilis
18460786 18460786 PRJNA637219_S_NODE_10035_length_170_cov_1.082645_g9990_i0 PRJNA637219 10035 170 1.082645 1.8404965 Brachionus patulus 160652 Rotifera other_Eukaryota 159 8.139999999999998e-35   NTclustered gi|14276851|gb|AF325132.1|AF325132 160652 g9990 i0 84.431 3.81176470588235 167 20 96 6 8 170 301 465 Brachionus patulus 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 648 159 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus patulus
22285872 22285872 PRJNA637219_S_NODE_15598_length_162_cov_0.902655_g15553_i0 PRJNA637219 15598 162 0.902655 1.4623011 Rotaria 231623 Rotifera other_Eukaryota 73.6 1.03e-13   NR CAF1188218.1 2762511 g15553 i0 91.7 4.66666666666667 36 3 66.7 0 1 108 278 313 CAF1188218.1 unnamed protein product [Rotaria sp. Silwood1] diamond 756 73.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1
23561433 23561433 PRJNA637219_S_NODE_3119_length_265_cov_1.643519_g3074_i0 PRJNA637219 3119 265 1.643519 4.35532535 Brachionus rubens 392764 Rotifera other_Eukaryota 226 1.3499999999999998e-54   NTclustered gi|632795131|gb|KJ489418.1| 392764 g3074 i0 85.135 6.32452830188679 222 31 83 2 19 239 6039 6259 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 1676 226 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
23561436 23561436 PRJNA637219_S_NODE_339_length_634_cov_24.381197_g299_i0 PRJNA637219 339 634 24.381197 154.57678898 Brachionus manjavacas 667381 Rotifera other_Eukaryota 462 2.4499999999999997e-125   NTclustered gi|2006240385|gb|MW559988.1| 667381 g299 i0 83.302 63.7066246056782 527 63 82 24 65 583 10469 9960 Brachionus manjavacas isolate DE chromosome I mitochondrion, complete sequence blastn 40390 462 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus manjavacas
28533924 28533924 PRJNA637219_S_NODE_6607_length_199_cov_1.113333_g6562_i0 PRJNA637219 6607 199 1.113333 2.21553267 Brachionus plicatilis 10195 Rotifera other_Eukaryota 64.3 2.27e-10   NR RNA00284.1 10195 g6562 i0 56.1 0.994974874371859 66 29 99.5 0 2 199 99 164 RNA00284.1 beta [Brachionus plicatilis] diamond 198 64.3 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
29051591 29051591 PRJNA637219_S_NODE_3988_length_240_cov_1.869110_g3943_i0 PRJNA637219 3988 240 1.86911 4.485864 Brachionus 10194 Rotifera other_Eukaryota 69.3 6.67e-12   NR AOP18532.1 96890 g3943 i0 63.6 2.7625 55 20 68.8 0 76 240 32 86 AOP18532.1 cytochrome c oxidase subunit III [Brachionus rotundiformis] diamond 663 69.7 0.994261119081779 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rotundiformis
29904038 29904038 PRJNA637219_S_NODE_871_length_453_cov_3.787129_g826_i0 PRJNA637219 871 453 3.787129 17.15569437 Ploima 84394 Rotifera other_Eukaryota 169 9.02e-50   NR UBY46733.1 104777 g826 i0 73.4 5.05298013245033 109 29 72.2 0 7 333 6 114 UBY46733.1 cytochrome c oxidase subunit II [Brachionus calyciflorus] diamond 2289 169 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
31819320 31819320 PRJNA637219_S_NODE_4977_length_220_cov_1.789474_g4932_i0 PRJNA637219 4977 220 1.789474 3.9368428 Proales similis 360698 Rotifera other_Eukaryota 79.3 3.89e-16   NR QKV49096.1 360698 g4932 i0 52.1 0.995454545454545 73 35 99.5 0 219 1 83 155 QKV49096.1 ATP synthase F0 subunit 6 [Proales similis] diamond 219 79.3 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;