RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA637219", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA637219 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17186649 17186649 PRJNA637219_S_NODE_11014_length_167_cov_0.864407_g10969_i0 PRJNA637219 11014 167 0.864407 1.44355969 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 93.5 8.25e-15   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g10969 i0 79.562 0.820359281437126 137 22 80 5 17 150 789154 789021 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 137 93.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
29209399 29209399 PRJNA637219_S_NODE_13109_length_165_cov_0.879310_g13064_i0 PRJNA637219 13109 165 0.87931 1.4508615 Pseudomonadati 3379134 Bacteria Bacteria 86.7 4.28e-18   NR WP_205761490.1 1639882 g13064 i0 72.2 6.85454545454545 54 15 98.2 0 3 164 45 98 WP_205761490.1 M14 family metallopeptidase [Longimicrobium terrae] diamond 1131 87.4 0.991990846681922 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium terrae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;