RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA637219", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA637219 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
608850 608850 PRJNA637219_S_NODE_7761_length_187_cov_1.347826_g7716_i0 PRJNA637219 7761 187 1.347826 2.52043462 Heterostelium album 2086695 Evosea other_Eukaryota 137 4.3e-28   NTclustered gi|1160575144|ref|XM_020582312.1| 670386 g7716 i0 84.286 2.19786096256684 140 22 75 0 1 140 1339 1478 Polysphondylium pallidum PN500 propionyl-CoA carboxylase (pccB), partial mRNA blastn 411 137 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
29322974 29322974 PRJNA637219_S_NODE_9009_length_177_cov_1.195312_g8964_i0 PRJNA637219 9009 177 1.195312 2.11570224 Dictyostelium purpureum 5786 Evosea other_Eukaryota 82 5.14e-17   NR XP_003292664.1 5786 g8964 i0 62.1 0.983050847457627 58 19 98.3 1 3 176 161 215 XP_003292664.1 uncharacterized protein DICPUDRAFT_157402 [Dictyostelium purpureum] diamond 174 82 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;