RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA635874" and tax_phylum = "Candidatus Uhriibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Uhriibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA635874 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32591277 32591277 PRJNA635874_P_NODE_49679_length_250_cov_0.870056_g49532_i0 PRJNA635874 49679 250 0.870056 2.17514 Pseudomonadati 3379134 Bacteria Bacteria 135 3.41e-35   NR OGL74600.1 1802392 g49532 i0 76.8 2.976 82 19 98.4 0 4 249 158 239 OGL74600.1 MAG: choline dehydrogenase [Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_02_FULL_60_10] diamond 744 136 0.992647058823529 Bacteria Bacteria candidate phyla   Candidatus Uhriibacteriota         Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_02_FULL_60_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;