RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA635874", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA635874 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
607730 607730 PRJNA635874_P_NODE_48821_length_250_cov_0.870056_g48674_i0 PRJNA635874 48821 250 0.870056 2.17514 Borreliella sinica 87162 Bacteria Bacteria 54.7 0.006   NTclustered gi|2624485748|gb|CP135183.1| 87162 g48674 i0 100 0.116 29 0 12 0 173 201 9484 9456 Borreliella sinica strain CMN3 plasmid lp54, complete sequence blastn 29 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella sinica
6258256 6258256 PRJNA635874_P_NODE_46805_length_251_cov_0.865169_g46658_i0 PRJNA635874 46805 251 0.865169 2.17157419 Borrelia 138 Bacteria Bacteria 54.7 0.006   NTclustered gi|2225474869|gb|CP073159.1| 141 g46658 i0 100 1.15537848605578 29 0 12 0 184 212 41255 41227 Borrelia parkeri strain SLO chromosome, complete genome blastn 290 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia parkeri
12087161 12087161 PRJNA635874_P_NODE_49030_length_250_cov_0.870056_g48883_i0 PRJNA635874 49030 250 0.870056 2.17514 Sphaerochaetaceae bacterium 2791017 Bacteria Bacteria 52.8 0.023   NTclustered gi|2621786375|emb|OY782833.1| 2791017 g48883 i0 100 0.112 28 0 11 0 223 250 1065570 1065543 MAG: Sphaerochaetaceae bacterium isolate 4316afa4-75a5-40cd-90fd-6a37d92e054f genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae   Sphaerochaetaceae bacterium
22284854 22284854 PRJNA635874_P_NODE_50058_length_250_cov_0.870056_g49911_i0 PRJNA635874 50058 250 0.870056 2.17514 Sphaerochaetaceae bacterium 2791017 Bacteria Bacteria 54.7 0.006   NTclustered gi|2621705858|emb|OY763920.1| 2791017 g49911 i0 100 0.26 29 0 12 0 85 113 1312978 1313006 MAG: Sphaerochaetaceae bacterium isolate d5506382-6fb0-4ee2-9b9e-b33663e62a62 genome assembly, chromosome: 1 blastn 65 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae   Sphaerochaetaceae bacterium
26764439 26764439 PRJNA635874_P_NODE_46481_length_251_cov_0.865169_g46334_i0 PRJNA635874 46481 251 0.865169 2.17157419 Leptospira borgpetersenii 174 Bacteria Bacteria 46.6 4.56e-4   NR WP_228003977.1 174 g46334 i0 54.1 0.442231075697211 37 17 44.2 0 35 145 8 44 WP_228003977.1 hypothetical protein, partial [Leptospira borgpetersenii] diamond 111 46.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii
27491833 27491833 PRJNA635874_P_NODE_43763_length_258_cov_1.243243_g43616_i0 PRJNA635874 43763 258 1.243243 3.20756694 Brachyspira hyodysenteriae 159 Bacteria Bacteria 46.6 2.72e-4   NR WP_085169531.1 159 g43616 i0 60 3.65116279069767 35 14 40.7 0 123 227 48 82 WP_085169531.1 hypothetical protein [Brachyspira hyodysenteriae] diamond 942 46.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae
30049172 30049172 PRJNA635874_P_NODE_17391_length_372_cov_0.785953_g17244_i0 PRJNA635874 17391 372 0.785953 2.92374516 Leptospira interrogans 173 Bacteria Bacteria 56.6 7.65e-8   NR WP_181743529.1 173 g17244 i0 45.5 0.532258064516129 66 35 53.2 1 199 2 1 65 WP_181743529.1 hypothetical protein [Leptospira interrogans] diamond 198 56.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira interrogans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;