RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA635874" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA635874 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22831995 22831995 PRJNA635874_P_NODE_46318_length_251_cov_0.865169_g46171_i0 PRJNA635874 46318 251 0.865169 2.17157419 Fusobacterium 848 Bacteria Bacteria 54.7 0.006   NTclustered gi|2705042081|gb|CP085192.1| 856 g46171 i0 100 0.48605577689243 29 0 12 0 11 39 1615279 1615307 Fusobacterium varium strain SB069 chromosome blastn 122 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
30965837 30965837 PRJNA635874_P_NODE_48054_length_251_cov_0.865169_g47907_i0 PRJNA635874 48054 251 0.865169 2.17157419 Fusobacterium necrophorum 859 Bacteria Bacteria 80.1 2.71e-17   NR WP_187105689.1 859 g47907 i0 56.4 0.932270916334661 78 34 93.2 0 240 7 17 94 WP_187105689.1 hypothetical protein, partial [Fusobacterium necrophorum] diamond 234 80.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
32830629 32830629 PRJNA635874_P_NODE_51920_length_249_cov_0.875000_g51773_i0 PRJNA635874 51920 249 0.875 2.17875 Fusobacterium perfoetens 852 Bacteria Bacteria 45.1 7.04e-4   NR MCF2625218.1 852 g51773 i0 41.9 0.746987951807229 62 30 71.1 2 189 13 13 71 MCF2625218.1 DUF2085 domain-containing protein [Fusobacterium perfoetens] diamond 186 45.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium perfoetens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;