RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA635874", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA635874 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4435751 4435751 PRJNA635874_P_NODE_62264_length_245_cov_0.895349_g62117_i0 PRJNA635874 62264 245 0.895349 2.19360505 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 196 9.65e-46   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g62117 i0 82.251 21.8775510204082 231 37 93 4 13 241 2367360 2367132 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 5360 196 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
27914563 27914563 PRJNA635874_P_NODE_71865_length_241_cov_0.916667_g71718_i0 PRJNA635874 71865 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 114 2.3700000000000003e-27   NR MBN9503050.1 2033014 g71718 i0 72 2.83817427385892 75 20 93.4 1 225 1 500 573 MBN9503050.1 S9 family peptidase [Armatimonadota bacterium] diamond 684 115 0.991304347826087 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29007666 29007666 PRJNA635874_P_NODE_73488_length_241_cov_0.916667_g73341_i0 PRJNA635874 73488 241 0.916667 2.20916747 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 95.9 1.1e-21   NR HZH99299.1 2682144 g73341 i0 57.5 0.995850622406639 80 29 99.6 1 1 240 10 84 HZH99299.1 PEP-CTERM sorting domain-containing protein [Fimbriimonadaceae bacterium] diamond 240 95.9 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
29840748 29840748 PRJNA635874_P_NODE_54631_length_248_cov_0.880000_g54484_i0 PRJNA635874 54631 248 0.88 2.1824 Fimbriimonas 1005038 Bacteria Bacteria 141 7.109999999999999e-38   NR WP_025229348.1 1005039 g54484 i0 89.6 1.86290322580645 77 8 93.1 0 247 17 376 452 WP_025229348.1 aspartate kinase [Fimbriimonas ginsengisoli] diamond 462 141 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;