RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA635874", tax_clade = "Stenosarchaea group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA635874 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19735013 19735013 PRJNA635874_P_NODE_73476_length_241_cov_0.916667_g73329_i0 PRJNA635874 73476 241 0.916667 2.20916747 Salarchaeum japonicum 555573 Archaea Archaea 54.7 0.006   NTclustered gi|2124061129|gb|CP085324.1| 555573 g73329 i0 94.286 0.261410788381743 35 2 15 0 102 136 271608 271574 Salarchaeum japonicum strain JCM 16327 chromosome, complete genome blastn 63 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Salarchaeum Salarchaeum japonicum
27207178 27207178 PRJNA635874_P_NODE_71202_length_242_cov_0.911243_g71055_i0 PRJNA635874 71202 242 0.911243 2.20520806 Methanimicrococcus hacksteinii 3028293 Archaea Archaea 42.7 0.0376   NR WP_318786618.1 3028293 g71055 i0 32.5 0.954545454545455 77 39 93 2 236 12 683 748 WP_318786618.1 InlB B-repeat-containing protein, partial [Methanimicrococcus hacksteinii] diamond 231 42.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanimicrococcus Methanimicrococcus hacksteinii
28261858 28261858 PRJNA635874_P_NODE_33666_length_289_cov_1.069444_g33519_i0 PRJNA635874 33666 289 1.069444 3.09069316 Methanomicrobiales 2191 Archaea Archaea 55.5 1.85e-6   NR MCK9298840.1 90427 g33519 i0 35.6 5.59515570934256 73 47 75.8 0 54 272 146 218 MCK9298840.1 exo-alpha-sialidase [Methanoculleus sp.] diamond 1617 55.8 0.99462365591397806 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;