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contig_metadata

15 rows where bioproject = "PRJNA635874", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 15 ✖

bioproject 1

  • PRJNA635874 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15182908 15182908 PRJNA635874_P_NODE_36412_length_280_cov_1.256039_g36265_i0 PRJNA635874 36412 280 1.256039 3.5169092 Pristionchus 54125 Nematoda Nematoda 106 1.95e-18   NTclustered gi|150984424|gb|EF634854.1| 54126 g36265 i0 91.026 9.56071428571429 78 7 28 0 137 214 495 572 Pristionchus pacificus small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 2677 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
22831584 22831584 PRJNA635874_P_NODE_17298_length_372_cov_2.434783_g17151_i0 PRJNA635874 17298 372 2.434783 9.05739276 Trichuris trichiura 36087 Nematoda Nematoda 172 1.44e-52   NR CDW60131.1 36087 g17151 i0 63.9 6.91129032258065 122 44 98.4 0 368 3 6 127 CDW60131.1 60S ribosomal protein L27a [Trichuris trichiura] diamond 2571 172 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
23559943 23559943 PRJNA635874_P_NODE_33279_length_290_cov_1.341014_g33132_i0 PRJNA635874 33279 290 1.341014 3.8889406 Opisthokonta 33154 Nematoda Nematoda 123 3.5e-30   NR KRY59418.1 45882 g33132 i0 65 8.96896551724138 100 29 97.2 2 283 2 76 175 KRY59418.1 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15, partial [Trichinella britovi] diamond 2601 124 0.991935483870968 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi
26637730 26637730 PRJNA635874_P_NODE_1141_length_1051_cov_2.864008_g1040_i0 PRJNA635874 1141 1051 2.864008 30.10072408 Meloidogyne graminicola 189291 Nematoda Nematoda 112 1.15e-24   NR AVZ46778.1 189291 g1040 i0 51.5 0.371075166508088 130 62 36.8 1 343 729 117 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 390 112 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
27143767 27143767 PRJNA635874_P_NODE_41662_length_264_cov_1.183246_g41515_i0 PRJNA635874 41662 264 1.183246 3.12376944 Dracunculus medinensis 318479 Nematoda Nematoda 119 1.1e-31   NR VDN51048.1 318479 g41515 i0 69 0.954545454545455 84 25 95.5 1 4 255 51 133 VDN51048.1 unnamed protein product [Dracunculus medinensis] diamond 252 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
29291431 29291431 PRJNA635874_P_NODE_19629_length_355_cov_1.198582_g19482_i0 PRJNA635874 19629 355 1.198582 4.2549661 Dracunculus medinensis 318479 Nematoda Nematoda 79.7 1.13e-14   NR VDN52825.1 318479 g19482 i0 38.9 1.83380281690141 108 59 89.6 2 330 13 40 142 VDN52825.1 unnamed protein product [Dracunculus medinensis] diamond 651 79.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
29512336 29512336 PRJNA635874_P_NODE_28970_length_307_cov_0.807692_g28823_i0 PRJNA635874 28970 307 0.807692 2.47961444 Meloidogyne enterolobii 390850 Nematoda Nematoda 55.5 2.73e-6   NR CAD2154976.1 390850 g28823 i0 36.1 0.947882736156352 97 58 91.9 2 17 298 134 229 CAD2154976.1 unnamed protein product [Meloidogyne enterolobii] diamond 291 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
29606837 29606837 PRJNA635874_P_NODE_16950_length_375_cov_1.784768_g16803_i0 PRJNA635874 16950 375 1.784768 6.69288 Wuchereria bancrofti 6293 Nematoda Nematoda 44.7 0.0305   NR VDM16675.1 6293 g16803 i0 52.4 0.336 42 20 33.6 0 148 23 173 214 VDM16675.1 unnamed protein product [Wuchereria bancrofti] diamond 126 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
29701590 29701590 PRJNA635874_P_NODE_690_length_1249_cov_1.091837_g619_i0 PRJNA635874 690 1249 1.091837 13.63704413 Wuchereria bancrofti 6293 Nematoda Nematoda 188 1.69e-51   NR VDM16675.1 6293 g619 i0 44.6 0.576461168935148 240 133 57.6 0 1235 516 172 411 VDM16675.1 unnamed protein product [Wuchereria bancrofti] diamond 720 188 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
29859785 29859785 PRJNA635874_P_NODE_49031_length_250_cov_0.870056_g48884_i0 PRJNA635874 49031 250 0.870056 2.17514 Dictyocaulus viviparus 29172 Nematoda Nematoda 57.4 2.83e-7   NR KJH40125.1 29172 g48884 i0 65.9 0.492 41 14 49.2 0 219 97 188 228 KJH40125.1 homeobox domain protein [Dictyocaulus viviparus] diamond 123 57.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
29998828 29998828 PRJNA635874_P_NODE_20131_length_352_cov_0.949821_g19984_i0 PRJNA635874 20131 352 0.949821 3.34336992 Rhabditida 6236 Nematoda Nematoda 144 2.33e-41   NR XGW27839.1 6289 g19984 i0 56.4 6.98011363636364 117 51 99.7 0 1 351 30 146 XGW27839.1 hypothetical protein V3C99_007992, partial [Haemonchus contortus] diamond 2457 144 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
30598850 30598850 PRJNA635874_P_NODE_62993_length_245_cov_0.895349_g62846_i0 PRJNA635874 62993 245 0.895349 2.19360505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 1.84e-27   NR KHN81895.1 6265 g62846 i0 64.2 8.90204081632653 81 29 99.2 0 2 244 913 993 KHN81895.1 putative coatomer subunit beta' [Toxocara canis] diamond 2181 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
31534919 31534919 PRJNA635874_P_NODE_72796_length_241_cov_0.916667_g72649_i0 PRJNA635874 72796 241 0.916667 2.20916747 Auanema sp. JU1783 2878363 Nematoda Nematoda 54.7 2.33e-6   NR CAI4220994.1 2878363 g72649 i0 42.4 1.29460580912863 59 30 68.5 2 168 4 373 431 CAI4220994.1 unnamed protein product [Auanema sp. JU1783] diamond 312 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
32021746 32021746 PRJNA635874_P_NODE_33558_length_289_cov_1.425926_g33411_i0 PRJNA635874 33558 289 1.425926 4.12092614 Opisthokonta 33154 Nematoda Nematoda 123 8.53e-32   NR XP_024509313.1 34506 g33411 i0 63.8 45.19723183391 94 34 97.6 0 6 287 28 121 XP_024509313.1 60S acidic ribosomal protein P0 [Strongyloides ratti] diamond 13062 123 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
32515732 32515732 PRJNA635874_P_NODE_1559_length_945_cov_2.647936_g1452_i0 PRJNA635874 1559 945 2.647936 25.0229952 Meloidogyne graminicola 189291 Nematoda Nematoda 60.1 2.82e-6   NR AVZ46778.1 189291 g1452 i0 32.3 0.412698412698413 130 88 41.3 0 152 541 117 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 390 60.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;