RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA635874", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA635874 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14636543 14636543 PRJNA635874_P_NODE_43852_length_257_cov_2.092391_g43705_i0 PRJNA635874 43852 257 2.092391 5.37744487 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 127 6.22e-34   NR XP_013759145.1 461836 g43705 i0 81.1 4.36575875486381 74 14 86.4 0 222 1 3 76 XP_013759145.1 40S ribosomal protein S4 [Thecamonas trahens ATCC 50062] diamond 1122 128 0.9921875 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
24834375 24834375 PRJNA635874_P_NODE_620_length_1285_cov_3.035479_g549_i0 PRJNA635874 620 1285 3.035479 39.00590515 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 401 5.17e-135   NR XP_013760592.1 461836 g549 i0 67.9 0.698054474708171 299 92 69.3 2 1228 338 43 339 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 897 401 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28880921 28880921 PRJNA635874_P_NODE_70308_length_242_cov_0.911243_g70161_i0 PRJNA635874 70308 242 0.911243 2.20520806 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 54.7 2.21e-6   NR XP_013755433.1 461836 g70161 i0 42.5 0.991735537190083 80 38 91.7 2 227 6 374 451 XP_013755433.1 purple acid phosphatase 18 [Thecamonas trahens ATCC 50062] diamond 240 54.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;