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contig_metadata

24 rows where bioproject = "PRJNA635397" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 24 ✖

bioproject 1

  • PRJNA635397 · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3156536 3156536 PRJNA635397_P_NODE_23863_length_327_cov_2.716535_g23409_i0 PRJNA635397 23863 327 2.716535 8.88306945 Alphapapillomavirus 7 337042 Viruses Viruses 604 1.8799999999999993e-168   NTclustered gi|1258167396|gb|MF288663.1| 333761 g23409 i0 100 100 327 0 100 0 1 327 1992 1666 Human papillomavirus 18 isolate C415154_R1_1138896_N-P, complete genome blastn 32700 604 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 7
3156765 3156765 PRJNA635397_P_NODE_38543_length_254_cov_1.701657_g38089_i0 PRJNA635397 38543 254 1.701657 4.32220878 Alphabaculovirus bomori 3047695 Viruses Viruses 52.8 0.023   NTclustered gi|393717332|gb|JQ991011.1| 271108 g38089 i0 100 0.110236220472441 28 0 11 0 77 104 19131 19158 Bombyx mori NPV strain Guangxi, complete genome blastn 28 52.8 1 Viruses       Naldaviricetes Lefavirales Baculoviridae Alphabaculovirus Alphabaculovirus bomori
3705314 3705314 PRJNA635397_P_NODE_20243_length_358_cov_3.666667_g19789_i0 PRJNA635397 20243 358 3.666667 13.12666786 Audreyjarvisvirus 2843351 Viruses Viruses 52.8 0.034   NTclustered gi|1878246544|ref|NC_049854.1| 1965467 g19789 i0 100 0.547486033519553 28 0 8 0 37 64 44760 44733 Lactococcus phage AM1, complete genome blastn 196 52.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Audreyjarvisvirus Audreyjarvisvirus AM1
4433439 4433439 PRJNA635397_P_NODE_28024_length_301_cov_1.324561_g27570_i0 PRJNA635397 28024 301 1.324561 3.98692861 Subteminivirus SMA7 2011079 Viruses Viruses 551 2.2699999999999992e-152   NTclustered gi|514361131|ref|NC_021569.1| 1343494 g27570 i0 99.668 74.2392026578073 301 1 100 0 1 301 1915 1615 Stenotrophomonas phage phiSMA7 proviral complete genome blastn 22346 551 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae Subteminivirus Subteminivirus SMA7
6984505 6984505 PRJNA635397_P_NODE_46826_length_242_cov_0.869822_g46372_i0 PRJNA635397 46826 242 0.869822 2.10496924 Caudoviricetes sp. 2832643 Viruses Viruses 414 2.41e-111   NTclustered gi|2054452022|tpg|BK031338.1| 2832643 g46372 i0 97.521 18.1115702479339 242 6 100 0 1 242 27265 27024 MAG TPA_asm: Caudoviricetes sp. isolate ctUPE4, partial genome blastn 4383 414 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
8259169 8259169 PRJNA635397_P_NODE_43507_length_246_cov_0.901734_g43053_i0 PRJNA635397 43507 246 0.901734 2.21826564 Caudoviricetes sp. 2832643 Viruses Viruses 217 7.449999999999999e-52   NTclustered gi|2054413371|tpg|BK035582.1| 2832643 g43053 i0 83.058 7.82926829268293 242 37 98 4 1 240 40716 40477 MAG TPA_asm: Caudoviricetes sp. isolate ct7A32, partial genome blastn 1926 217 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
9534136 9534136 PRJNA635397_P_NODE_23548_length_330_cov_1.237354_g23094_i0 PRJNA635397 23548 330 1.237354 4.0832682 Caudoviricetes sp. 2832643 Viruses Viruses 457 5.6299999999999986e-124   NTclustered gi|2915004039|gb|OR222348.1| 2832643 g23094 i0 96.39 16.769696969697 277 10 100 0 54 330 35244 34968 MAG: Caudoviricetes sp. isolate MSP1050 genomic sequence blastn 5534 457 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
10810122 10810122 PRJNA635397_P_NODE_39509_length_252_cov_0.871508_g39055_i0 PRJNA635397 39509 252 0.871508 2.19620016 Caudoviricetes sp. 2832643 Viruses Viruses 93.5 1.35e-14   NTclustered gi|2914922610|gb|OR221417.1| 2832643 g39055 i0 98.113 1.01984126984127 53 1 21 0 10 62 27580 27632 MAG: Caudoviricetes sp. isolate MSP1672 genomic sequence blastn 257 93.5 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
13359876 13359876 PRJNA635397_P_NODE_29131_length_295_cov_0.977477_g28677_i0 PRJNA635397 29131 295 0.977477 2.88355715 Gammaretrovirus murleu 3428959 Viruses Viruses 479 1.0599999999999996e-130   NTclustered gi|18448741|gb|AF462057.1| 11801 g28677 i0 95.932 100 295 12 100 0 1 295 3248 2954 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 29500 479 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
13360045 13360045 PRJNA635397_P_NODE_38251_length_255_cov_1.686813_g37797_i0 PRJNA635397 38251 255 1.686813 4.30137315 Caudoviricetes sp. 2832643 Viruses Viruses 390 4.32e-104   NTclustered gi|2054392764|tpg|BK031062.1| 2832643 g37797 i0 94.8 100.011764705882 250 13 98 0 4 253 13959 13710 MAG TPA_asm: Caudoviricetes sp. isolate ctahB1, partial genome blastn 25503 390 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
15908716 15908716 PRJNA635397_P_NODE_37453_length_258_cov_1.486486_g36999_i0 PRJNA635397 37453 258 1.486486 3.83513388 Siphoviridae sp. ctLnP14 2827851 Viruses Viruses 444 3.32e-120   NTclustered gi|2052865947|tpg|BK032550.1| 2827851 g36999 i0 97.674 3.9922480620155 258 6 100 0 1 258 7960 8217 MAG TPA_asm: Siphoviridae sp. ctLnP14, partial genome blastn 1030 444 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Siphoviridae sp. ctLnP14
21008323 21008323 PRJNA635397_P_NODE_41957_length_248_cov_1.217143_g41503_i0 PRJNA635397 41957 248 1.217143 3.01851464 Propionibacterium phage LilBandit 2041561 Viruses Viruses 370 5.45e-98   NTclustered gi|1269172293|gb|MF919516.1| 2041561 g41503 i0 93.574 100.625 249 15 100 1 1 248 28792 28544 Propionibacterium phage LilBandit, complete genome blastn 24955 370 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Pahexavirus Propionibacterium phage LilBandit
22831138 22831138 PRJNA635397_P_NODE_35338_length_266_cov_1.937824_g34884_i0 PRJNA635397 35338 266 1.937824 5.15461184 root 1 Root_unresolved Root_unresolved 492 1.2099999999999999e-134   NTclustered gi|1465382782|emb|LS992246.1| 10376 g34884 i0 100 100 266 0 100 0 1 266 96544 96279 Human gammaherpesvirus 4 isolate Human herpesvirus 4 genome assembly, chromosome: I blastn 26600 492 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
23558349 23558349 PRJNA635397_P_NODE_29279_length_294_cov_1.217195_g28825_i0 PRJNA635397 29279 294 1.217195 3.5785533 Caudoviricetes sp. 2832643 Viruses Viruses 472 1.7699999999999998e-128   NTclustered gi|2058028471|tpg|BK042086.1| 2832643 g28825 i0 95.578 100.19387755102 294 13 100 0 1 294 9929 9636 MAG TPA_asm: Caudoviricetes sp. isolate ctl0w2, partial genome blastn 29457 472 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
24105604 24105604 PRJNA635397_P_NODE_23039_length_334_cov_1.306513_g22585_i0 PRJNA635397 23039 334 1.306513 4.36375342 Pahexavirus 1982251 Viruses Viruses 551 2.549999999999999e-152   NTclustered gi|670145376|gb|KJ578768.1| 1500808 g22585 i0 96.407 47.7634730538922 334 12 100 0 1 334 14549 14216 Propionibacterium phage PHL082M00, complete genome blastn 15953 553 0.996383363471971 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Pahexavirus Pahexavirus PHL082M03
26605918 26605918 PRJNA635397_P_NODE_41181_length_249_cov_1.494318_g40727_i0 PRJNA635397 41181 249 1.494318 3.72085182 Bacillus phage BeachBum 1983461 Viruses Viruses 76.3 1.61e-15   NR YP_009910182.1 1983461 g40727 i0 47.5 0.963855421686747 80 42 96.4 0 3 242 20 99 YP_009910182.1 late transcriptional activator [Bacillus phage BeachBum] diamond 240 76.3 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Salasmaviridae Harambevirus Harambevirus beachbum
26618641 26618641 PRJNA635397_P_NODE_41881_length_248_cov_1.491429_g41427_i0 PRJNA635397 41881 248 1.491429 3.69874392 Cinunavirus 2560117 Viruses Viruses 53.1 7.66e-6   NR ADW08988.1 686440 g41427 i0 35 3.65322580645161 80 49 96.8 2 246 7 193 269 ADW08988.1 helicase-like protein, partial [Clavibacter phage CN77] diamond 906 53.5 0.992523364485981 Viruses               Clavibacter phage CN77
26891356 26891356 PRJNA635397_P_NODE_4341_length_938_cov_2.366474_g3977_i0 PRJNA635397 4341 938 2.366474 22.19752612 Barns Ness dog whelk bunya/arena-like virus 1 2021931 Viruses Viruses 115 1.94e-24   NR ASM94090.1 2021931 g3977 i0 33.9 0.812366737739872 254 146 79.6 6 51 797 85 321 ASM94090.1 putative RNA-dependent RNA polymerase, partial [Barns Ness dog whelk bunya/arena-like virus 1] diamond 762 115 1 Viruses   Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales     Barns Ness dog whelk bunya/arena-like virus 1
27428849 27428849 PRJNA635397_P_NODE_41543_length_249_cov_0.880682_g41089_i0 PRJNA635397 41543 249 0.880682 2.19289818 Caudoviricetes sp. 2832643 Viruses Viruses 114 3.5700000000000005e-27   NR DAQ76521.1 2832643 g41089 i0 76.8 0.987951807228916 82 19 98.8 0 3 248 139 220 DAQ76521.1 MAG TPA: hypothetical protein [Caudoviricetes sp.] diamond 246 114 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
28565257 28565257 PRJNA635397_P_NODE_45287_length_244_cov_0.877193_g44833_i0 PRJNA635397 45287 244 0.877193 2.14035092 Klosneuvirus KNV1 1977640 Viruses Viruses 48.9 2.48e-4   NR ARF12104.1 1977640 g44833 i0 46.9 0.602459016393443 49 21 60.2 2 17 163 34 77 ARF12104.1 serpin [Klosneuvirus KNV1] diamond 147 48.9 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae Klosneuvirus Klosneuvirus KNV1
30049151 30049151 PRJNA635397_P_NODE_18551_length_377_cov_2.483553_g18097_i0 PRJNA635397 18551 377 2.483553 9.36299481 Changping bunya-like virus 1 1922825 Viruses Viruses 47.8 0.00308   NR APG79246.1 1922825 g18097 i0 29 0.795755968169761 100 69 78.8 2 352 56 1391 1489 APG79246.1 RNA-dependent RNA polymerase, partial [Changping bunya-like virus 1] diamond 300 47.8 1 Viruses               Changping bunya-like virus 1
30397376 30397376 PRJNA635397_P_NODE_25993_length_313_cov_1.566667_g25539_i0 PRJNA635397 25993 313 1.566667 4.90366771 Changping bunya-like virus 1 1922825 Viruses Viruses 69.7 3.07e-11   NR APG79246.1 1922825 g25539 i0 37.2 0.900958466453674 94 55 90.1 2 25 306 1505 1594 APG79246.1 RNA-dependent RNA polymerase, partial [Changping bunya-like virus 1] diamond 282 69.7 1 Viruses               Changping bunya-like virus 1
32325953 32325953 PRJNA635397_P_NODE_1099_length_1860_cov_3.543928_g968_i0 PRJNA635397 1099 1860 3.543928 65.9170608 Lothians earthworm bunya/orthobunya-like virus 1 2021934 Viruses Viruses 145 2.9499999999999992e-34   NR ASM94074.1 2021934 g968 i0 27.6 0.641935483870968 398 254 62.9 13 1365 196 6 377 ASM94074.1 putative glycoprotein, partial [Lothians earthworm bunya/orthobunya-like virus 1] diamond 1194 145 1 Viruses   Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales     Lothians earthworm bunya/orthobunya-like virus 1
32685460 32685460 PRJNA635397_P_NODE_9780_length_563_cov_2.412245_g9331_i0 PRJNA635397 9780 563 2.412245 13.58093935 Viruses 10239 Viruses Viruses 116 3.06e-26   NR APG79342.1 1923749 g9331 i0 40.5 1.80106571936057 158 93 83.7 1 529 59 1819 1976 APG79342.1 RNA-dependent RNA polymerase [Wuhan snail virus 2] diamond 1014 116 1 Viruses               Wuhan snail virus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;