RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA635397" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA635397 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4433197 4433197 PRJNA635397_P_NODE_14544_length_437_cov_4.997253_g14090_i0 PRJNA635397 14544 437 4.997253 21.83799561 Caenorhabditis briggsae 6238 Nematoda Nematoda 340 8.049999999999999e-89   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g14090 i0 86.538 72.2013729977117 312 38 71 4 128 437 1307 998 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 31552 340 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
5709616 5709616 PRJNA635397_P_NODE_43005_length_247_cov_0.885057_g42551_i0 PRJNA635397 43005 247 0.885057 2.18609079 Brugia malayi 6279 Nematoda Nematoda 54.7 0.006   NTclustered gi|24370466|emb|AL606837.1| 6279 g42551 i0 100 0.117408906882591 29 0 12 0 121 149 82173 82145 Brugia malayi genomic DNA MIF-1 locus blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
27713154 27713154 PRJNA635397_P_NODE_33704_length_273_cov_1.330000_g33250_i0 PRJNA635397 33704 273 1.33 3.6309 Necator americanus 51031 Nematoda Nematoda 44.7 0.00149   NR XP_064064499.1 51031 g33250 i0 42.6 0.67032967032967 61 28 62.6 2 32 202 18 75 XP_064064499.1 hypothetical protein RB195_021736 [Necator americanus] diamond 183 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
29070643 29070643 PRJNA635397_P_NODE_45848_length_243_cov_0.911765_g45394_i0 PRJNA635397 45848 243 0.911765 2.21558895 Trichuris suis 68888 Nematoda Nematoda 58.9 1.85e-8   NR KFD54745.1 68888 g45394 i0 44.8 0.827160493827161 67 37 82.7 0 215 15 86 152 KFD54745.1 hypothetical protein M513_04445 [Trichuris suis] diamond 201 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30649416 30649416 PRJNA635397_P_NODE_38493_length_254_cov_2.154696_g38039_i0 PRJNA635397 38493 254 2.154696 5.47292784 Ancylostoma caninum 29170 Nematoda Nematoda 42.7 0.0333   NR RCN30229.1 29170 g38039 i0 36.1 0.720472440944882 61 34 72 1 67 249 146 201 RCN30229.1 phosphoribosylaminoimidazole carboxylase [Ancylostoma caninum] diamond 183 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
31439731 31439731 PRJNA635397_P_NODE_31396_length_283_cov_1.966667_g30942_i0 PRJNA635397 31396 283 1.966667 5.56566761 Nippostrongylus brasiliensis 27835 Nematoda Nematoda 60.5 3.51e-8   NR WKX92480.1 27835 g30942 i0 35.2 4.91872791519435 91 55 96.5 1 278 6 846 932 WKX92480.1 hypothetical protein Q1695_010479 [Nippostrongylus brasiliensis] diamond 1392 60.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
31977498 31977498 PRJNA635397_P_NODE_35918_length_264_cov_1.518325_g35464_i0 PRJNA635397 35918 264 1.518325 4.008378 Anisakis simplex 6269 Nematoda Nematoda 83.2 2.55e-18   NR VDK59560.1 6269 g35464 i0 55.7 0.795454545454545 70 31 79.5 0 261 52 24 93 VDK59560.1 unnamed protein product [Anisakis simplex] diamond 210 83.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;