RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA635397", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 7 ✖

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA635397 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26891348 26891348 PRJNA635397_P_NODE_23501_length_330_cov_2.031128_g23047_i0 PRJNA635397 23501 330 2.031128 6.7027224 Polyangiaceae bacterium 2268199 Bacteria Bacteria 44.3 0.0236   NR MFO0569835.1 2268199 g23047 i0 30.9 0.854545454545454 94 58 79.1 1 281 21 107 200 MFO0569835.1 SH3 domain-containing protein [Polyangiaceae bacterium] diamond 282 44.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28660105 28660105 PRJNA635397_P_NODE_19307_length_368_cov_1.905085_g18853_i0 PRJNA635397 19307 368 1.905085 7.0107128 Myxococcus stipitatus 83455 Bacteria Bacteria 45.1 0.0216   NR WP_044282579.1 83455 g18853 i0 37.1 0.570652173913043 70 43 56.3 1 139 345 154 223 WP_044282579.1 MATE family efflux transporter [Myxococcus stipitatus] diamond 210 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus stipitatus
30554708 30554708 PRJNA635397_P_NODE_43813_length_245_cov_5.034884_g43359_i0 PRJNA635397 43813 245 5.034884 12.3354658 Corallococcus 83461 Bacteria Bacteria 41.6 0.0299   NR WP_148712917.1 83461 g43359 i0 35.7 0.857142857142857 70 41 82 3 7 207 3 71 WP_148712917.1 MULTISPECIES: hypothetical protein [Corallococcus] diamond 210 41.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus  
31534889 31534889 PRJNA635397_P_NODE_6916_length_701_cov_1.234076_g6481_i0 PRJNA635397 6916 701 1.234076 8.65087276 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 48.9 0.00656   NR MBT8493690.1 2026735 g6481 i0 34.8 0.380884450784593 89 46 36.8 4 294 551 89 168 MBT8493690.1 PhnD/SsuA/transferrin family substrate-binding protein [Deltaproteobacteria bacterium] diamond 267 48.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31756073 31756073 PRJNA635397_P_NODE_20297_length_358_cov_1.656140_g19843_i0 PRJNA635397 20297 358 1.65614 5.9289812 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 60.5 8.91e-8   NR MDH4227569.1 2026735 g19843 i0 42.2 1.31564245810056 90 47 72.9 3 7 267 936 1023 MDH4227569.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 471 60.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31914279 31914279 PRJNA635397_P_NODE_44897_length_244_cov_0.912281_g44443_i0 PRJNA635397 44897 244 0.912281 2.22596564 Myxococcota bacterium 2818507 Bacteria Bacteria 48.9 2.08e-4   NR MED5374640.1 2818507 g44443 i0 42.3 0.872950819672131 71 41 87.3 0 13 225 69 139 MED5374640.1 alpha/beta hydrolase [Myxococcota bacterium] diamond 213 48.9 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32072457 32072457 PRJNA635397_P_NODE_18918_length_373_cov_1.136667_g18464_i0 PRJNA635397 18918 373 1.136667 4.23976791 Anaeromyxobacter soli 2922725 Bacteria Bacteria 44.7 0.0301   NR WP_243338378.1 2922725 g18464 i0 33.3 0.651474530831099 81 51 65.1 1 71 313 219 296 WP_243338378.1 esterase/lipase family protein [Anaeromyxobacter soli] diamond 243 44.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter soli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;