RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA635397" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA635397 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9534544 9534544 PRJNA635397_P_NODE_5848_length_777_cov_2.869318_g5438_i0 PRJNA635397 5848 777 2.869318 22.29460086 Spiroplasma endosymbiont of Amphimallon solstitiale 3066288 Bacteria Bacteria 54.7 0.022   NTclustered gi|2719904886|emb|OZ034999.1| 3066288 g5438 i0 100 0.0373230373230373 29 0 4 0 596 624 1103598 1103626 Spiroplasma endosymbiont of Amphimallon solstitiale isolate 54757 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Amphimallon solstitiale
12085098 12085098 PRJNA635397_P_NODE_26210_length_311_cov_3.163866_g25756_i0 PRJNA635397 26210 311 3.163866 9.83962326 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 Bacteria Bacteria 54.7 0.008   NTclustered gi|971185387|gb|CP013128.1| 1749074 g25756 i0 100 0.0932475884244373 29 0 9 0 211 239 77582 77610 Mycoplasma sp. (ex Biomphalaria glabrata) isolate Barreiro1 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. (ex Biomphalaria glabrata)
17731559 17731559 PRJNA635397_P_NODE_15954_length_414_cov_1.123167_g15500_i0 PRJNA635397 15954 414 1.123167 4.64991138 Ureaplasma 2129 Bacteria Bacteria 54.7 0.011   NTclustered gi|2177595200|gb|CP086123.1| 2130 g15500 i0 96.97 0.63768115942029 33 0 8 1 289 321 48504 48535 Ureaplasma urealyticum strain MIN-201 chromosome, complete genome blastn 264 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma urealyticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;