RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA635397" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA635397 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8259113 8259113 PRJNA635397_P_NODE_40047_length_251_cov_0.876404_g39593_i0 PRJNA635397 40047 251 0.876404 2.19977404 Allomeiothermus silvanus 52022 Bacteria Bacteria 453 5.34e-123   NTclustered gi|296848933|gb|CP002042.1| 526227 g39593 i0 99.203 3.30677290836653 251 2 100 0 1 251 1673369 1673119 Meiothermus silvanus DSM 9946, complete genome blastn 830 453 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus
17731665 17731665 PRJNA635397_P_NODE_47934_length_229_cov_2.480769_g47480_i0 PRJNA635397 47934 229 2.480769 5.68096101 Truepera 332248 Bacteria Bacteria 311 3.05e-80   NTclustered gi|470486385|ref|NR_076754.1| 332249 g47480 i0 91.228 508.445414847162 228 20 99 0 1 228 506 733 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 116434 311 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
18457883 18457883 PRJNA635397_P_NODE_33515_length_274_cov_1.154229_g33061_i0 PRJNA635397 33515 274 1.154229 3.16258746 Trueperaceae bacterium 2026798 Bacteria Bacteria 346 1.03e-90   NTclustered gi|2621701816|emb|OY759346.1| 2026798 g33061 i0 89.399 439.649635036496 283 19 100 7 1 274 3601102 3600822 MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 blastn 120464 346 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
21008348 21008348 PRJNA635397_P_NODE_43557_length_246_cov_0.895954_g43103_i0 PRJNA635397 43557 246 0.895954 2.20404684 Allomeiothermus silvanus 52022 Bacteria Bacteria 427 3.16e-115   NTclustered gi|296848933|gb|CP002042.1| 526227 g43103 i0 97.967 1.38617886178862 246 5 100 0 1 246 611291 611046 Meiothermus silvanus DSM 9946, complete genome blastn 341 427 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus
24105609 24105609 PRJNA635397_P_NODE_24779_length_321_cov_1.193548_g24325_i0 PRJNA635397 24779 321 1.193548 3.83128908 Truepera 332248 Bacteria Bacteria 479 1.17e-130   NTclustered gi|470486385|ref|NR_076754.1| 332249 g24325 i0 93.73 390.635514018692 319 20 99 0 1 319 708 1026 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 125394 481 0.995841995841996 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
27491806 27491806 PRJNA635397_P_NODE_41623_length_249_cov_0.875000_g41169_i0 PRJNA635397 41623 249 0.875 2.17875 Thermus sp. 275 Bacteria Bacteria 92 8.95e-22   NR MEN2982691.1 275 g41169 i0 58.2 0.951807228915663 79 33 95.2 0 4 240 45 123 MEN2982691.1 hypothetical protein [Thermus sp.] diamond 237 92 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;