RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA635397", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA635397 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15908288 15908288 PRJNA635397_P_NODE_1493_length_1621_cov_7.928295_g1324_i0 PRJNA635397 1493 1621 7.928295 128.51766195 Hydrogenimonas urashimensis 2740515 Bacteria Bacteria 54.7 0.046   NTclustered gi|1945264869|dbj|AP023212.1| 2740515 g1324 i0 94.444 0.0222085132634176 36 1 2 1 1210 1245 2158777 2158811 Hydrogenimonas urashimensis SSM-sur55 DNA, complete genome blastn 36 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Hydrogenimonadaceae Hydrogenimonas Hydrogenimonas urashimensis
27017632 27017632 PRJNA635397_P_NODE_23282_length_332_cov_1.440154_g22828_i0 PRJNA635397 23282 332 1.440154 4.78131128 Sulfuricurvum sp. IAE1 2546102 Bacteria Bacteria 43.9 0.0222   NR WP_132811958.1 2546102 g22828 i0 42.3 0.469879518072289 52 28 47 1 173 328 115 164 WP_132811958.1 lipocalin family protein [Sulfuricurvum sp. IAE1] diamond 156 43.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp. IAE1
31503236 31503236 PRJNA635397_P_NODE_9556_length_571_cov_8.287149_g9107_i0 PRJNA635397 9556 571 8.287149 47.31962079 Campylobacterales bacterium 2268180 Bacteria Bacteria 47.8 0.0115   NR MBN2824932.1 2268180 g9107 i0 30.2 0.504378283712785 96 65 49.4 1 131 412 172 267 MBN2824932.1 DUF2213 domain-containing protein [Campylobacterales bacterium] diamond 288 47.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales     Campylobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;