RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA635397", tax_kingdom = "Bacillati" and tax_phylum = "Vulcanimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA635397 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9534470 9534470 PRJNA635397_P_NODE_45388_length_243_cov_2.076471_g44934_i0 PRJNA635397 45388 243 2.076471 5.04582453 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 383 6.84e-102   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g44934 i0 95.082 206.736625514403 244 11 100 1 1 243 5032239 5032482 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 50237 383 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
22282948 22282948 PRJNA635397_P_NODE_38038_length_256_cov_1.409836_g37584_i0 PRJNA635397 38038 256 1.409836 3.60918016 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 350 7.37e-92   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g37584 i0 91.373 511.8515625 255 22 99 0 1 255 5033445 5033699 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 131034 350 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;