RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA635397", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA635397 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24105594 24105594 PRJNA635397_P_NODE_19419_length_367_cov_1.363946_g18965_i0 PRJNA635397 19419 367 1.363946 5.00568182 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 65.9 2.07e-11   NR RYD71399.1 2026800 g18965 i0 50.7 0.596730245231608 73 36 59.7 0 262 44 6 78 RYD71399.1 MAG: hypothetical protein EOP84_24950, partial [Verrucomicrobiaceae bacterium] diamond 219 65.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26891355 26891355 PRJNA635397_P_NODE_40941_length_250_cov_0.870056_g40487_i0 PRJNA635397 40941 250 0.870056 2.17514 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 62.4 4.89e-9   NR MEI6343602.1 2026799 g40487 i0 47.5 0.732 61 26 70.8 2 249 73 202 258 MEI6343602.1 glycosyltransferase [Verrucomicrobiota bacterium] diamond 183 62.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27965262 27965262 PRJNA635397_P_NODE_36205_length_263_cov_1.368421_g35751_i0 PRJNA635397 36205 263 1.368421 3.59894723 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 112 1.15e-26   NR MDZ4742534.1 2026799 g35751 i0 64.6 1.87072243346008 82 29 93.5 0 262 17 94 175 MDZ4742534.1 thiamine pyrophosphate-binding protein [Verrucomicrobiota bacterium] diamond 492 112 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28565250 28565250 PRJNA635397_P_NODE_32927_length_276_cov_2.024631_g32473_i0 PRJNA635397 32927 276 2.024631 5.58798156 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 152 2.2499999999999993e-43   NR RYD69104.1 2026800 g32473 i0 84.6 0.989130434782609 91 14 98.9 0 274 2 138 228 RYD69104.1 MAG: MFS transporter, partial [Verrucomicrobiaceae bacterium] diamond 273 152 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29998826 29998826 PRJNA635397_P_NODE_39091_length_253_cov_0.866667_g38637_i0 PRJNA635397 39091 253 0.866667 2.19266751 Bacteria 2 Bacteria Bacteria 123 2.3e-31   NR PYJ03686.1 2026799 g38637 i0 73.5 3.88932806324111 83 22 98.4 0 3 251 141 223 PYJ03686.1 MAG: hypothetical protein DME25_11515 [Verrucomicrobiota bacterium] diamond 984 124 0.991935483870968 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30365735 30365735 PRJNA635397_P_NODE_8832_length_601_cov_1.886364_g8385_i0 PRJNA635397 8832 601 1.886364 11.33704764 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 205 1.07e-61   NR RYD65414.1 2026800 g8385 i0 78.7 0.608985024958403 122 26 60.9 0 2 367 199 320 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 366 205 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30681026 30681026 PRJNA635397_P_NODE_35313_length_266_cov_2.253886_g34859_i0 PRJNA635397 35313 266 2.253886 5.99533676 Limisphaera sp. 2838792 Bacteria Bacteria 43.5 0.0253   NR MEJ5238961.1 2838792 g34859 i0 32.5 0.93609022556391 83 55 93.6 1 14 262 135 216 MEJ5238961.1 FIST N-terminal domain-containing protein [Limisphaera sp.] diamond 249 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Limisphaeraceae Limisphaera Limisphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;