RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA635397", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Handelsmaniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Handelsmaniibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA635397 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28975823 28975823 PRJNA635397_P_NODE_30008_length_290_cov_1.437788_g29554_i0 PRJNA635397 30008 290 1.437788 4.1695852 Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_1 2099671 Bacteria Bacteria 70.9 8.81e-12   NR OGG44698.1 1817868 g29554 i0 45.4 1.00344827586207 97 52 99.3 1 288 1 798 894 OGG44698.1 MAG: hypothetical protein A3F84_28760 [Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10] diamond 291 70.9 1 Bacteria Bacteria candidate phyla   Candidatus Handelsmaniibacteriota         Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;