RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA635397", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA635397 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8806616 8806616 PRJNA635397_P_NODE_24007_length_326_cov_2.166008_g23553_i0 PRJNA635397 24007 326 2.166008 7.06118608 Bacteria 2 Bacteria Bacteria 603 6.749999999999998e-168   NTclustered gi|402243568|gb|JX294354.1| 1226340 g23553 i0 100 86.4110429447853 326 0 100 0 1 326 1136 1461 GN02 bacterium oral taxon 873 clone 4Q04 16S ribosomal RNA gene, partial sequence blastn 28170 603 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Gracilibacteria bacterium oral taxon 873
8806658 8806658 PRJNA635397_P_NODE_34547_length_269_cov_2.071429_g34093_i0 PRJNA635397 34547 269 2.071429 5.57214401 Bacteria 2 Bacteria Bacteria 497 2.63e-136   NTclustered gi|402243568|gb|JX294354.1| 1226340 g34093 i0 100 97.2453531598513 269 0 100 0 1 269 1066 798 GN02 bacterium oral taxon 873 clone 4Q04 16S ribosomal RNA gene, partial sequence blastn 26159 497 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Gracilibacteria bacterium oral taxon 873

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;