RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA635397" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA635397 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1882051 1882051 PRJNA635397_P_NODE_35682_length_265_cov_1.369792_g35228_i0 PRJNA635397 35682 265 1.369792 3.6299488 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.024   NTclustered gi|66804740|ref|XM_631011.1| 352472 g35228 i0 100 0.105660377358491 28 0 11 0 47 74 3299 3326 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0289761) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
15908572 15908572 PRJNA635397_P_NODE_29193_length_294_cov_2.045249_g28739_i0 PRJNA635397 29193 294 2.045249 6.01303206 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 145 4.36e-40   NR XP_004368068.1 1257118 g28739 i0 78 5.04081632653061 82 18 83.7 0 48 293 9 90 XP_004368068.1 arsenite transporter, putative [Acanthamoeba castellanii str. Neff] diamond 1482 145 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17731642 17731642 PRJNA635397_P_NODE_40814_length_250_cov_0.875706_g40360_i0 PRJNA635397 40814 250 0.875706 2.189265 root 1 Root_unresolved Root_unresolved 52.8 0.023   NTclustered gi|330791968|ref|XM_003284015.1| 5786 g40360 i0 100 0.224 28 0 11 0 21 48 1196 1223 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_45211), mRNA blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
28091597 28091597 PRJNA635397_P_NODE_37185_length_259_cov_1.435484_g36731_i0 PRJNA635397 37185 259 1.435484 3.71790356 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 82 1.26e-17   NR KAH3761877.1 1580589 g36731 i0 55.4 0.752895752895753 65 29 75.3 0 24 218 74 138 KAH3761877.1 multiprotein-bridging factor 1b [Pelomyxa schiedti] diamond 195 82 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;