RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA633835" and tax_phylum = "Bacteroidota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA633835 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5707442 5707442 PRJNA633835_S_NODE_5825_length_295_cov_2.819820_g5757_i0 PRJNA633835 5825 295 2.81982 8.318469 Adhaeribacter swui 2086471 Bacteria Bacteria 150 3.3499999999999995e-43   NR WP_185270738.1 2086471 g5757 i0 88.9 0.915254237288136 90 10 91.5 0 270 1 135 224 WP_185270738.1 ferritin-like domain-containing protein [Adhaeribacter swui] diamond 270 150 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Adhaeribacter Adhaeribacter swui
8256984 8256984 PRJNA633835_S_NODE_3607_length_343_cov_0.892593_g3539_i0 PRJNA633835 3607 343 0.892593 3.06159399 uncultured Saccharicrinis sp. 1618115 Bacteria Bacteria 52.8 0.032   NTclustered gi|2621705959|emb|OY764021.1| 1618115 g3539 i0 100 0.0816326530612245 28 0 8 0 214 241 3041714 3041741 MAG: uncultured Saccharicrinis sp. isolate f927af63-5116-48d7-ac25-05da7cc028b4 genome assembly, chromosome: 2 blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Saccharicrinis uncultured Saccharicrinis sp.
26637683 26637683 PRJNA633835_S_NODE_2261_length_399_cov_1.131902_g2193_i0 PRJNA633835 2261 399 1.131902 4.51628898 Myroides odoratimimus 76832 Bacteria Bacteria 171 5.219999999999999e-52   NR WP_286468238.1 76832 g2193 i0 94.4 0.676691729323308 90 5 67.7 0 49 318 1 90 WP_286468238.1 hypothetical protein, partial [Myroides odoratimimus] diamond 270 171 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratimimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;